Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00660 ATGGCGTTAGCCGTTAGGGCTTTGTGGAGAGTGAGAAAGAGTTGCAGAGGAAACCCTCAGTTCTTCTTCAATCCACACCCTTCCTCTTTCTGCAAACatgcacaatcaaattcctattcaatttcaaattcaaatttaaattcCCTTCTTCACAAATTGCTTCACGTCCCAAATTCACACATCAAAACGACGCTGGATCAGGAAATGGCTTCCATTCAAAGCTCTCAACCTTGTTGGGACTTCCTTGTTACCTCTCTCTCCCCTTCTTCTTCCCACAAAGCTCGATTGGTTTTGGAATGGATTTTGGAGAAGATGCTGAAAGAAAATGAGAAAGACCATGATCTCTTCTCTGAACTCATCTTTCTATGTGAAAAGGTGAAGGATGTGATGCTAGGAATGCGTGTGTTTAGTTCTATGGAGGCTACTGGAGTTAAACCCACTTCCATGGTTTTCAATTCCCTTATAAGTGTTTGTTTGTCTTCCAATGATGTTGTTACAGCAGTTAGTTTATTTGAGATCATGCAGAGTTCAGAGAGCTATAAACCTGATTTTCACACATATAACATCTTCATTTCAGCATTTTCCAAGTCAGGGAATGTTGATGCCATGTTAGCTTGGTACTCGGCGAAAAAGGCTGCTGGACTTGGTCCTGATCTTCAAATGTATGAATCCCTCGTATCAGGCTGTGTTAATTCTAGAAGGTTTGAGATTGCTGACAGAATTTTTGAAGAAATGATGATTTCTGGAATTGTACCTAGTGCATCAATACTGGAGAGTATGCTTAATGGGATTTGCAAGCAAAAGAGATTGGAACGAGCGGTGGAGTTTTTCAAGTTTGTGATAGATTCTGGATGGGAAATGAATGAGAACATGACTGATAAGTTAGTAGCACTGTATCATCAACAAGGGAAAGTTGAAGATATGGAGGAGCTACTTGAAACAATGACGAAGCCCTGTGTAATTACTGCTGGTGTTATAGCGCGAATTCATTGTGCAATTGTGAGAATGTATGCCATGTTAGATAGATTGGATGATGTAGAGTTTGCTGTGGGGAGAATGCTTAAACAAGGGCTGTCATTCACCAGCGCAGATGATGTTGAAAAGGTAATCTGTTCATACTTTAGAAGGGAAGCTTATGATAGGCTAGACGTATTCTTGGAATGTTTAAAGAGTTGCTTTGTGCTTAAGAAACCAACTTATGATTTGTTGATATCTGGCTATAGAAGAGCACAATTGCTTGAAAAAGTAGATAGAGTGATGGAAGATATGAAATCAGCTGGATTAGCATAA 1290 0.3876 MALAVRALWRVRKSCRGNPQFFFNPHPSSFCKHAQSNSYSISNSNLNSLLHKLLHVPNSHIKTTLDQEMASIQSSQPCWDFLVTSLSPSSSHKARLVLEWILEKMLKENEKDHDLFSELIFLCEKVKDVMLGMRVFSSMEATGVKPTSMVFNSLISVCLSSNDVVTAVSLFEIMQSSESYKPDFHTYNIFISAFSKSGNVDAMLAWYSAKKAAGLGPDLQMYESLVSGCVNSRRFEIADRIFEEMMISGIVPSASILESMLNGICKQKRLERAVEFFKFVIDSGWEMNENMTDKLVALYHQQGKVEDMEELLETMTKPCVITAGVIARIHCAIVRMYAMLDRLDDVEFAVGRMLKQGLSFTSADDVEKVICSYFRREAYDRLDVFLECLKSCFVLKKPTYDLLISGYRRAQLLEKVDRVMEDMKSAGLA 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00660 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 218 252 IPR002885 -
Cca05g00660 429 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 428 - -
Cca05g00660 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 429 IPR002885 -
Cca05g00660 429 Pfam PPR repeat 259 284 IPR002885 -
Cca05g00660 429 Pfam PPR repeat 399 428 IPR002885 -
Cca05g00660 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Cca05g00660 429 Gene3D Tetratricopeptide repeat domain 207 332 IPR011990 GO:0005515
Cca05g00660 429 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 253 287 IPR002885 -
Cca05g00660 429 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 428 - -
Cca05g00660 429 TIGRFAM PPR: pentatricopeptide repeat domain 259 289 IPR002885 -
Cca05g00660 429 TIGRFAM PPR: pentatricopeptide repeat domain 185 208 IPR002885 -
Cca05g00660 429 TIGRFAM PPR: pentatricopeptide repeat domain 150 183 IPR002885 -
Cca05g00660 429 TIGRFAM PPR: pentatricopeptide repeat domain 221 253 IPR002885 -
Cca05g00660 429 TIGRFAM PPR: pentatricopeptide repeat domain 399 428 IPR002885 -
Cca05g00660 429 Pfam Pentatricopeptide repeat domain 212 254 IPR002885 -
Cca05g00660 429 Gene3D Tetratricopeptide repeat domain 24 201 IPR011990 GO:0005515
Cca05g00660 429 Pfam PPR repeat family 146 196 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00660 112 429 Glycosyltransferase AT1G05670 21.569 3.45e-16 79.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00660 - - ccaj:109813006 831.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00660 05 16413099 16416173 Cca05g00660 05 16413099 16416173 ECH