Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00658 ATGGAGTATTGGTTGAGGGAGCTAGAAGGGAAGCAAGCACATGACCCTTTAATGATAGAGAAGATGAGGGGTAGTGAGAGATGTGTGTGGGTGCCAGGGGCAGTGATAGTGGGAGCAGGGCCATCAGGGCTTGCAACAGCAGCACACCTAAAGGAGAAAGGAGTGCCAAGCCTAATCCTAGAGAGATCCAACTGCATAGCATCTTTGTGGCAGCTAAAGACCTATGATCGCCTCCACCTTCACTTGCCAAAGCAATTCTGCGAGCTTCCCTTGATGGGATTCCCCTCCGACTTCCCCAAGTACCCCACCAAGCAGCAGTTCGTAGACTACTTGGAGAGCTACGCCCGGCGATTCGACATTCGCCCTCGGTTCGGCGAGACGGTTCGCCGGGCGGAGTTCGACCACACCCTCGGCTTCTGGAGGGTGAGGAGCTCAGGTAAGAAAGAATTAGTGACAGAATTTGTGTGCAGGTGGCTGATTGTGGCCACTGGGGAGAATGCAGAGGCTGTGGTGCCCAATATTGAGGGAATGGGGGAGTTTGCTGGGACAATAAAGCACACAAGCTTTTACAAGAGTGGAGAGGAGTTTAGAGGGAAGAGGGTGTTGGTGGTTGGGTGTGGGAATTCTGGGATGGAAGTTTGCTTGGATCTTTGCAACCATAATGCTACTCCTTCTCTTGTGGTTAGAGATACAGTACATATCTTACCACGAGAGATGCTGGGAAAATCAACTTTTGGGTTGTCCATGTGGTTGCTGAAGTGGTTTCCAATTCGGTTCGTGGACCGGTTCCTGCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTGCTGATAGTGTCATGGCTCATGCTTGGTGACACGGCTCGGTTCGGATTGGACCGGCCAAGGTTGGGTCCCCTTCAACTCAAAAACCTGTCCGGAAAGACACCAGTGCTGGACGTGGGTACCCTTGCCAAGATTAAAAGTGGACACATAAAGGTACGACCAGGCATCAAGCGGTTAAAACGTTATACAGTTGAATTTGTCGATGGAAGAACTGAGAATTTTGATGCTATTATATTGGCAACTGGCTACAAAAGCAATGTGCCCTATTGGTTAAAGGAAGAGGATATGTTCTCTAAGGAAGATGGGTTCCCTACGAAGCCATTTCCAAATGGATGGAAGGGTGAGAATGGTCTTTATGCAGTTGGTTTCACCAAACGTGGCCTAATGGGTACATCCCTTGATGCAAGGAGAATAGCTGAAGACATTGAACGGTGTTGGAAAGCTGAGGCAAAGCATAGTACTGCTTTTTCTCTCTCACTTAATGTGCCACAATCCAATTCATGA 1383 0.4635 MEYWLRELEGKQAHDPLMIEKMRGSERCVWVPGAVIVGAGPSGLATAAHLKEKGVPSLILERSNCIASLWQLKTYDRLHLHLPKQFCELPLMGFPSDFPKYPTKQQFVDYLESYARRFDIRPRFGETVRRAEFDHTLGFWRVRSSGKKELVTEFVCRWLIVATGENAEAVVPNIEGMGEFAGTIKHTSFYKSGEEFRGKRVLVVGCGNSGMEVCLDLCNHNATPSLVVRDTVHILPREMLGKSTFGLSMWLLKWFPIRFVDRFLLXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLIVSWLMLGDTARFGLDRPRLGPLQLKNLSGKTPVLDVGTLAKIKSGHIKVRPGIKRLKRYTVEFVDGRTENFDAIILATGYKSNVPYWLKEEDMFSKEDGFPTKPFPNGWKGENGLYAVGFTKRGLMGTSLDARRIAEDIERCWKAEAKHSTAFSLSLNVPQSNS 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00658 460 Coils Coil 265 265 - -
Cca05g00658 460 SUPERFAMILY FAD/NAD(P)-binding domain 35 235 IPR036188 -
Cca05g00658 460 Pfam Pyridine nucleotide-disulphide oxidoreductase 35 231 - -
Cca05g00658 460 Gene3D - 306 447 IPR036188 -
Cca05g00658 460 SUPERFAMILY FAD/NAD(P)-binding domain 197 432 IPR036188 -
Cca05g00658 460 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 22 266 - -
Cca05g00658 460 PANTHER INDOLE-3-PYRUVATE MONOOXYGENASE YUCCA6 293 448 - -
Cca05g00658 460 PRINTS Pyridine nucleotide disulphide reductase class-II signature 33 55 - -
Cca05g00658 460 PRINTS Pyridine nucleotide disulphide reductase class-II signature 196 220 - -
Cca05g00658 460 PRINTS FAD-dependent pyridine nucleotide reductase signature 34 53 - -
Cca05g00658 460 PRINTS FAD-dependent pyridine nucleotide reductase signature 200 218 - -
Cca05g00658 460 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 22 266 - -
Cca05g00658 460 PANTHER FLAVIN-BINDING MONOOXYGENASE-LIKE PROTEIN (AFU_ORTHOLOGUE AFUA_4G09220) 293 448 - -
Cca05g00658 460 Gene3D - 31 259 IPR036188 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00658 Cca-Chr5 16202663 16208108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00658 K11816 - gmx:100804746 788.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00658 05 16202663 16208108 Cca05g00658 05 16202663 16208108 ECH