Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00653 ATGGCTTCTCCTTCGCATCGCACCCGCATCAACCAGTTTTACGCTTCGAAGAAGAGGAAAGCTGCGTCACCGGTTCGCAAGGCTGGGAGAACTGAAAAGGGTGCAAGGCATGGGGCTGGCGCGTCTCCGAGCGCCAAAGGCACTTTGGACGGTTACTTGGTTCCGTCGCAGGACGGCGGTGACGACGGCGGCGCGGCTCGGCTGGATTCGGTTAAGAGAAATTTGGCCGCAGAGATTGGTGGTTCTCTGGACGGTGAAGTTGATAAGCCCACTCTTTCGTCGGCGCAATCTACTATGCCGAGTGCGGCAAGGTCGGAGCTTAAACAGTTTGCAGCTGATTTTTTTCCTTTGTATTGCAGTGAATTGCAGCCAAGTGTAGATTTGCCATCGGAGATGAGAGTGGATGACCAAAAGGGACATGGTTCCCTGGTATTAGTAGAGGGAAGTAGTGGTTTTCCGCAGAAGAATAGTGAAGCTGTTGGTAAGCCATGTTTTGGTGGTGAAAATGTGTTGCTGAGTGAGAAGATCAATGGAGGCGTCAAGTCTGGCATTGCTGGTAATACTATGGGATATGCTGCTGGCTCTTGTATGAAGGTCTCTGGTGGTGGTGATACTACTGCCTTTGAGACAGGCTTTAGGAAATGTAGTAATACACCTAAACCGTCTGTGAATATGGCTGAATGCTACACTCCGGGGTCTTTGATAGTAAAAGCATGTGTTAAGGAGACTCCAAAGTCTACACGGGGCAGCTCATCGTTTTCACCTGGAGAGGCATTTTGGAATGAAGCAATTCAGCTTGCTGATGGTTTGGATGTTCCCATGGCTTATGATCCTTCTAAGGTTACAGGAGAAAGTAATGTGGTGGAGGAGGAACCTGAGATGAATAACTCATGCAATTTACAGAATTATGATGGCAAGCCAAGGAAAATATTGGACCAAAGTAAAAACAGAATCTGGAATCGGGAAATGGGTGCTACTTTAGGGTCAGTTATGCACACAAGAGATTCTATGAAAGAAGCATCCAGCCTTCCTGTTAAACATTTTGATTTTTCATTTGAGGACAACAATATGGAAGAAAATACCTTGAAAAATTGTTGTGTTGATGATCCAATCAATGTTACTAGTGGGGCTGGTAAACAGGATGAATCAGTTTCTGTGACAGGTCATACATATGGAAAGAGGAATGAAGTGCAAGAAAAGGCTTTAGTAGAAACATTAGGGAATAGGATTTGTCAGAATAATGTTAATATGACATATAATTCACCCCACAATGAGGTGAGGACACCAATTAGTGCACGTGCATCTGATGAAGCCGGCACTCCTTCAACTAGTGTATCACTCAATGATGATTTTGACCTAAATAGCTGGCTTCCTCCTGAAATATGCAGCATATATAGAAAGAAAGGAATCTCAAAGCTTTACAATTGGCAGGTTGACTGCCTTCGAGTGAATGGTGTCCTACAGAGAAGAAATCTTGTATATTGTGCTTCTACAAGTGCTGGTAAGAGTTTTGTTGCTGAGATTTTAATGCTGCGGAGGGTGATAGTAACTGGAAAAATGGCAGTACTTGTTCTTCCATATGTATCAATTTGCGCAGAAAAGGCAGAACATCTTGAACGTCTCCTTGAGCCACTTGGGAAACATGTTCGAAGTTATTATGGAAACCAAGGTGGTGCAACACTTCCTAAAGATACTTCTGTAGCTGTCTGCACAATAGAGAAGGCAAACTCACTAATTAATAGATTATTGGAGGAGGGCCGTCTATCAGAAATGGGAATTATTGTGATTGATGAACTGCATATGGTTGGTGATCCAAGAAGAGGTTATCTTCTAGAACTGATGTTGACAAAGCTTCGTTATGCAGCTGGGGAAGGTATTTCAAAATCAAGTGATGGGGAAAGTTCAGGTGGAAGCAGCGATAAGACTGATCTTGCACAAGGCCTTCAAATTGTTGGAATGAGTGCAACAATGCCAAATGTTGCAGCAGTTGCTGACTGGCTTCAAGCAGCACTATACCAGACAGAGTTCCGGCCTGTTCCTCTGGAAGAATATATAAAAGTTGGTAATTCCATTTATAACAAAAGTATGGAACTTTCTAGAACAATCTCAAAAGTGGCTGACATAGGTGGTAAAGATCCAGATCATGTTGTTGAACTATGTAATGAGGTTGTTCAAGAGGGGCAATCAGTGTTAATATTTTGCTCTAGCCGGAAGGGTTGTGAATCAACTGCAAGGCACATTGCAAAGTTCCTCAAAAGCTTTACTGTTGATGTTAATGATAATGATTGTGAGTTTGCTGATATTACTTCTGCTATTAACTCCTTGGGAAAGTGTCCTGCCGGGTTGGACCCCATATTAGAGGAAACTCTTCCTTCCGGTGTTGCATTTCACCATGCTGGCCTTACGGTTGAGGAAAGAGAAATTGTTGAAACCTGTTATCGAAAAGGCCTTGTACGTGTCTTAACTGCCACATCAACCTTAGCAGCTGGGGTAAATCTTCCTGCTAGGAGGGTAATTTTCCGCCAACCTAGAATTGGTTGTGATTTTCTAGATGGGACGAGGTACAAACAGATGGCTGGTCGTGCTGGTCGAACTGGAATAGATACAAAAGGAGAAAGTATACTTATCTGCAAACCAGAAGAAATAAAAAAAGTTACAGGACTTCTTAATGAAAGCTGTCCTCCATTACATTCCTGTTTATCAGAAGATATAAATGGAATGACTCATGCAATCTTAGAAGTAGTGGCTGGAGCAATAGTTCAAACTGCTAGTGATATTAATCGGTATGTTAGATGTACTCTTTTGAATTCTACAAGACCATTTCTAGACGTTGTGAAATCTGCACAAGAATCTCTCCGATGGTTGTGCCAAAGAAAGTTTCTTGAATGGAATGAAGACACGAAACTCTACAGTACCACACCTCTTGGACGTGCAGCTTTTGGTAGTTCTCTCTGTCCAGAAGAATCACTAATCGTGTTAGCTGATCTTTCAAGGGCAAGGGAAGGATTTGTTCTTGCATCTGACTTGCATTTAGTTTATTTGGTGACGCCAATCAATGTTGATGTCGAGCCAGATTGGGAATTGTACTATGAGCATTTTGTGAAATTGTCTGCTCTTGACCAGTCAGTTGGCAATCGAGTAGGTGTGACAGAACCATTCTTGATGCATATGGCACATGGCGCACCACTACGTGGTTCAAACAAGTCAAGAGATAATACAAGATCATTGTACAATAAACGAAGAAATCAACTTGGGGTTTCCAATGCAACAGTTAACTATGATGATCAAACACTTCGTGTTTGTAGAAGATTCTATGTTGCTCTCATTTTGTCACTTCTAGTTCAGGAAACTCCTGTGGGCGAGGTTTGTGCAGCATTTAAAGTTGCCAGAGGAATGGTTCAAGCTTTGCAAGAGAATGCTGGTAGGTTTGCATCTATGGTTGCTGTGTTTTGTGAGAGACTTGGGTGGCATGATCTTGAAGGCTTGGTTGCCAAGTTTCAAAACCGTGTATCATTTGGAGTTAGAGCAGAGATTGTAGAACTCACCACCATTCCCTATGTTAAAGGTTCTCGAGCCAGAGCACTCTATAAAGCAGGTTTACGTACGCCTCTTGCAATTGCTGAAGCATCCATTCCTGAGCTAGCAAAAGCGCTTTTTGAATCTTCATTATGGGCCACAGAAGAAGGATCTGCAAAAAGGAGTTTTCAATTTGGTGTAGCAAAAAAGATAAAGAATGGTGCTCGCAAGATTGTTCTTGATAAAGCTGAGGAGGCAAGGAATGCTGCTTTCTCAGCCTTTAAATCACTTGGGTACGATGTCCCACAGTTTGCTCCTCCCATATTATCTACTGCTGCTCGTGATTCTATCAGGCAAGAAGCTGGAAGTACCTCTGGAAGTGAAACAACTGATACTAGTCCTAGTTTTGTTGATGCAAATGGCATCAATAATTCTAATAAATTTGCTTTAAATAAAGAAAGAGAAGACTTAATAAAATTATCTGTCAATGGTGCTCTGGCTTCTGTAGAAGGAAAATCAAGCAGCGGGATGATATGTAGGGTGTCTACTGTTCCAGTTGCAGGACCTACAATGGATGAGCTCAATGGGACTCTTGACCATGCCAAAAATCCAGACGTTACCGCTCTCTCTGTTCAATTGCAGAAACCGAATGATAAATCTGGGGCACATGATGGGTGCCGTGCTCATTGTACAGTGGTGCAACATAATGGGAATTTGCCTAGTGGCAATGCTGGTAGTTCCAGCCAGAAAGGTCCCATTAATGCAGTTAGTAGTCCTGGCGGGCTTGATTCATTTTTGGATCTGTGGGACACTATGCCAGAGTTCTACTTTGATATCCATTACATGAAACGATTGGAATTACACTCTGTTGCCCCCTTCGAAATCCATGGCATAGCTGTTTGTTGGGAAAATTCTCCTGTTTACTACATTAATCTTCCCAGAGACATTCTGTTGTCTGACAATAGAAAAGATGGTTGTTTATCCATGAGTGCATGCAGTCAGAAGCAGAAAGTTTCTTCTTCTAATTCTAACCAAGATTTAGCAATTGCTATATATAGATGGAGCAGAATTAGTAAAATAATAGGGAAAGGAAATGTGAGAAAATTCACCTGGAATTTGAAGATTCAGATTCAGGTGCTGAAAAGGCCTGCATTTTCAGTCCAGAGATTTGGTTGCTTGGACACACTTGGAAAAAGTATGGACCTTAAAGTTGTAGACAATTCTTACGTGTTATTGCCCCCTATTCATGTTAAAGATGCAATTGATATGTGCATTGTGACTTGGATTCTTTGGCCCGAAGAAGAGAGGAGCTCTAGTCCAAACCTGGATAAGGAGGTAAAGAAGAGATTATCATCTGAAGATGCTGCAGTGGCCAATCAGAGTGGCAGGTGGAGGAATCAGATGCGAAGGGCTGCTCATAATGGTTGCTGCCGTCGGGTTGCTCAAACACGGGCATTATGTTCAGTTCTTTGGAAATTACTTGTTTCTGAGGAGCTTGTTGAAGTGCTTATGGGAATAGAAATCCCGTTGGTGAATGTTCTTGCTGACATGGAGCTTTGGGGAATTGGTGTTGATTTGGAGAGATGCATCCAGGCTCGTAAATTGTTGGTTAAAAGGCTAAAGCATCTTGAGAAGGAAGCTTATAAGCTGGCTGGTATAACATTTTCATTACATATGCCAGCAGATATTGCGAAGGTTCTGTATGAGCACTTGAAGCTGCCCATACCTGATGTGCGGAATAAGGGAAAACAACATCCAAGTACTGGCAAACACTGTTTGGATGCACTGAGGCATGAACATCCCATTGTTCCAGTCATTAAAGAACATCGAACAATGTCAAAGCTGTTGAACTCTACGCTAGGATCAATTTGTTCTCTGGCTAGGCTTTCAGTAAGCACACAGAAGTATACATTACATGGTCATTGGCTCCAGACATCCACAGCAACTGGTCGGCTTTCAATGGAGGAACCTAATCTTCAGTGTGTTGAACATACAGTAGACTTCAAAATGAAAGAGGAGGAAAATGAAGGTGATGCTGATGAGAGTTATTGTAGAATTAATGCTCGTGATTTCTTTGTTCCTACCCAGGATAACTGGTTACTTTTAACAGCAGATTATTCTCAGATAGAATTGAGATTGATGGCACACTTCTCTAAAGACTCTTCACTTGTTGAACTTCTCAGTAAGCCTGATGGTGATGTCTTTACAATGATAGCAGCAAGATGGACCAGGTGTCCAGAGGTTTCAGTGGGTTCCCAGGAGAGAGAGCAGACCAAAAAGATGGTGTATGGCATTCTTTATGGTATGGGTGTCAATAGCCTTGCAGAACAACTGGATTGCACTTCTGATGAAGCTGCTGAAAAGATTACTGACTTTAAAAGCTCTTTTCCTGGTGTGGCTTCCTGGCTTCGTGAAGCTGTTGCATCTTGTCGTAGTAAAGGATATGTGGAGACTCTTAAAGGAAGAAAACGGTTTTTGTCAAAAATTAAATTGGGCAGCAGTACTGAAAAATCCAAAGCTCAGAGGCAAGCTGTAAATTCCATTTGTCAGGGATCTGCAGCTGACATAATTAAGATTGCAATGATAAGAATTTACTCTGCAATTGTCGCTGGATATGATAGCCTGGATTCCAGTTCTTCAGTAGCAGCCAAGTTTCACATGCTTAAAGATCGTTGCAGGATTCTGTTGCAGGTACACGATGAATTAGTTTTGGAAGTTGATCCTTCTGTGATAAATGAAGCTGCCCTGCTATTACAGACAAGCATGGAGAATGCGGTCTCACTTCTTGTTCCTTTGACTGTCAAACTTAAGGTTGGAAGAACATGGGGATCTTTGGAGCCATTTACACCTGATAAATTCAAGGATGACACTCTTGTCGCTGAATCCTGA 6405 0.4226 MASPSHRTRINQFYASKKRKAASPVRKAGRTEKGARHGAGASPSAKGTLDGYLVPSQDGGDDGGAARLDSVKRNLAAEIGGSLDGEVDKPTLSSAQSTMPSAARSELKQFAADFFPLYCSELQPSVDLPSEMRVDDQKGHGSLVLVEGSSGFPQKNSEAVGKPCFGGENVLLSEKINGGVKSGIAGNTMGYAAGSCMKVSGGGDTTAFETGFRKCSNTPKPSVNMAECYTPGSLIVKACVKETPKSTRGSSSFSPGEAFWNEAIQLADGLDVPMAYDPSKVTGESNVVEEEPEMNNSCNLQNYDGKPRKILDQSKNRIWNREMGATLGSVMHTRDSMKEASSLPVKHFDFSFEDNNMEENTLKNCCVDDPINVTSGAGKQDESVSVTGHTYGKRNEVQEKALVETLGNRICQNNVNMTYNSPHNEVRTPISARASDEAGTPSTSVSLNDDFDLNSWLPPEICSIYRKKGISKLYNWQVDCLRVNGVLQRRNLVYCASTSAGKSFVAEILMLRRVIVTGKMAVLVLPYVSICAEKAEHLERLLEPLGKHVRSYYGNQGGATLPKDTSVAVCTIEKANSLINRLLEEGRLSEMGIIVIDELHMVGDPRRGYLLELMLTKLRYAAGEGISKSSDGESSGGSSDKTDLAQGLQIVGMSATMPNVAAVADWLQAALYQTEFRPVPLEEYIKVGNSIYNKSMELSRTISKVADIGGKDPDHVVELCNEVVQEGQSVLIFCSSRKGCESTARHIAKFLKSFTVDVNDNDCEFADITSAINSLGKCPAGLDPILEETLPSGVAFHHAGLTVEEREIVETCYRKGLVRVLTATSTLAAGVNLPARRVIFRQPRIGCDFLDGTRYKQMAGRAGRTGIDTKGESILICKPEEIKKVTGLLNESCPPLHSCLSEDINGMTHAILEVVAGAIVQTASDINRYVRCTLLNSTRPFLDVVKSAQESLRWLCQRKFLEWNEDTKLYSTTPLGRAAFGSSLCPEESLIVLADLSRAREGFVLASDLHLVYLVTPINVDVEPDWELYYEHFVKLSALDQSVGNRVGVTEPFLMHMAHGAPLRGSNKSRDNTRSLYNKRRNQLGVSNATVNYDDQTLRVCRRFYVALILSLLVQETPVGEVCAAFKVARGMVQALQENAGRFASMVAVFCERLGWHDLEGLVAKFQNRVSFGVRAEIVELTTIPYVKGSRARALYKAGLRTPLAIAEASIPELAKALFESSLWATEEGSAKRSFQFGVAKKIKNGARKIVLDKAEEARNAAFSAFKSLGYDVPQFAPPILSTAARDSIRQEAGSTSGSETTDTSPSFVDANGINNSNKFALNKEREDLIKLSVNGALASVEGKSSSGMICRVSTVPVAGPTMDELNGTLDHAKNPDVTALSVQLQKPNDKSGAHDGCRAHCTVVQHNGNLPSGNAGSSSQKGPINAVSSPGGLDSFLDLWDTMPEFYFDIHYMKRLELHSVAPFEIHGIAVCWENSPVYYINLPRDILLSDNRKDGCLSMSACSQKQKVSSSNSNQDLAIAIYRWSRISKIIGKGNVRKFTWNLKIQIQVLKRPAFSVQRFGCLDTLGKSMDLKVVDNSYVLLPPIHVKDAIDMCIVTWILWPEEERSSSPNLDKEVKKRLSSEDAAVANQSGRWRNQMRRAAHNGCCRRVAQTRALCSVLWKLLVSEELVEVLMGIEIPLVNVLADMELWGIGVDLERCIQARKLLVKRLKHLEKEAYKLAGITFSLHMPADIAKVLYEHLKLPIPDVRNKGKQHPSTGKHCLDALRHEHPIVPVIKEHRTMSKLLNSTLGSICSLARLSVSTQKYTLHGHWLQTSTATGRLSMEEPNLQCVEHTVDFKMKEEENEGDADESYCRINARDFFVPTQDNWLLLTADYSQIELRLMAHFSKDSSLVELLSKPDGDVFTMIAARWTRCPEVSVGSQEREQTKKMVYGILYGMGVNSLAEQLDCTSDEAAEKITDFKSSFPGVASWLREAVASCRSKGYVETLKGRKRFLSKIKLGSSTEKSKAQRQAVNSICQGSAADIIKIAMIRIYSAIVAGYDSLDSSSSVAAKFHMLKDRCRILLQVHDELVLEVDPSVINEAALLLQTSMENAVSLLVPLTVKLKVGRTWGSLEPFTPDKFKDDTLVAES 2134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00653 2134 MobiDBLite consensus disorder prediction 1 67 - -
Cca05g00653 2134 Pfam DEAD/DEAH box helicase 486 659 IPR011545 GO:0003676|GO:0005524
Cca05g00653 2134 Coils Coil 1698 1718 - -
Cca05g00653 2134 Gene3D Taq DNA Polymerase; Chain T, domain 4 1693 1802 - -
Cca05g00653 2134 Gene3D - 686 886 IPR027417 -
Cca05g00653 2134 SMART helicmild6 784 866 IPR001650 -
Cca05g00653 2134 CDD SF2_C_Ski2 677 878 - -
Cca05g00653 2134 SMART ultradead3 469 688 IPR014001 -
Cca05g00653 2134 Gene3D - 456 678 IPR027417 -
Cca05g00653 2134 PANTHER DNA POLYMERASE I 473 2122 IPR002298 GO:0003887|GO:0006261
Cca05g00653 2134 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 486 880 IPR027417 -
Cca05g00653 2134 CDD DEXHc_POLQ-like 457 678 - -
Cca05g00653 2134 MobiDBLite consensus disorder prediction 1288 1310 - -
Cca05g00653 2134 Gene3D - 1819 2114 - -
Cca05g00653 2134 Gene3D - 1052 1197 - -
Cca05g00653 2134 PRINTS DNA-polymerase family A (pol I) signature 1810 1832 IPR002298 GO:0003887|GO:0006261
Cca05g00653 2134 PRINTS DNA-polymerase family A (pol I) signature 1927 1952 IPR002298 GO:0003887|GO:0006261
Cca05g00653 2134 PRINTS DNA-polymerase family A (pol I) signature 1964 1975 IPR002298 GO:0003887|GO:0006261
Cca05g00653 2134 PRINTS DNA-polymerase family A (pol I) signature 1986 1997 IPR002298 GO:0003887|GO:0006261
Cca05g00653 2134 PRINTS DNA-polymerase family A (pol I) signature 2065 2078 IPR002298 GO:0003887|GO:0006261
Cca05g00653 2134 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 715 915 IPR001650 -
Cca05g00653 2134 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 483 675 IPR014001 -
Cca05g00653 2134 PANTHER DNA POLYMERASE THETA 473 2122 - -
Cca05g00653 2134 SUPERFAMILY DNA/RNA polymerases 1671 2117 IPR043502 -
Cca05g00653 2134 Gene3D - 1426 1690 IPR036397 GO:0003676
Cca05g00653 2134 Pfam Helix-turn-helix domain 871 962 IPR046931 -
Cca05g00653 2134 SMART polaultra3 1857 2082 IPR001098 GO:0003677|GO:0003887|GO:0006260
Cca05g00653 2134 CDD DNA_pol_A_theta 1693 2117 - -
Cca05g00653 2134 Pfam Helicase conserved C-terminal domain 715 866 IPR001650 -
Cca05g00653 2134 Gene3D - 1881 2025 - -
Cca05g00653 2134 SUPERFAMILY Sec63 N-terminal domain-like 1090 1211 - -
Cca05g00653 2134 Pfam DNA polymerase family A 1700 2115 IPR001098 GO:0003677|GO:0003887|GO:0006260
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00653 Cca-Chr5 15956434 15979673 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00653 K02349 - gmx:100813857 3633.96
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00653 05 15956434 15979673 Cca05g00653 05 15956434 15979673 ECH