LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00628	ATGTCTCGCGTGTATGTTGGTAACTTGGATTCGCGAGTCACCGAGAGGGATCTCGAGGACGAATTCCGTGTTTTCGGGGTTATACGAAGTGTTTGGGTTGCGCGGAGACCACCAGGTTATGCTTTTATTGACTTTGATGACCGGAGAGACGCGCAGGATGCAATTCGTGAATTGGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCCCACAATTCTAGAGGTGGAGGTGGTGGCCGAGGTCGCTCTGGCGGTTCTGATTTGAAATGTTATGAGTGTGGTGAACCTGGTCATTTTGCTCGTGAATGTCGCTTGCGTGGTGGTTCTGGAAGACGCCGTAGCCGTAGTCCACCCCGATTTCGTAGGAGCCCAAGTTATGGGCGAAGGAGTTATAGTCCTCGTGGGCGATCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGTAGCTACAGCAGGTCACCTCCTTATCGTGGGCGAGAGGAGGTTCCATATGCTAATGGAAATGGCATTAGGGAACGACGCAGAAGCAGAAGTTGA	534	0.5262	MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGIRERRRSRS	177

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00628	177	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	2	73	IPR000504	GO:0003723
	Cca05g00628	177	SUPERFAMILY	Retrovirus zinc finger-like domains	81	104	IPR036875	GO:0003676\|GO:0008270
	Cca05g00628	177	Gene3D	-	1	73	IPR012677	-
	Cca05g00628	177	SMART	rrm1_1	3	69	IPR000504	GO:0003723
	Cca05g00628	177	PANTHER	SERINE/ARGININE RICH SPLICING FACTOR	2	169	-	-
	Cca05g00628	177	MobiDBLite	consensus disorder prediction	101	177	-	-
	Cca05g00628	177	Gene3D	-	83	142	-	-
	Cca05g00628	177	Pfam	Zinc knuckle	88	103	IPR001878	GO:0003676\|GO:0008270
	Cca05g00628	177	PANTHER	SERINE/ARGININE-RICH SPLICING FACTOR RSZ22A-LIKE ISOFORM X1	2	169	-	-
	Cca05g00628	177	MobiDBLite	consensus disorder prediction	66	87	-	-
	Cca05g00628	177	CDD	RRM_SRSF3_like	3	71	-	-
	Cca05g00628	177	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	4	61	IPR000504	GO:0003723
	Cca05g00628	177	SUPERFAMILY	RNA-binding domain, RBD	3	83	IPR035979	GO:0003676
	Cca05g00628	177	SMART	c2hcfinal6	88	104	IPR001878	GO:0003676\|GO:0008270
	Cca05g00628	177	ProSiteProfiles	Zinc finger CCHC-type profile.	88	103	IPR001878	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00628	Cca-Chr5	14813580	14817543	Transposed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00628	K12896		-	gmx:100796961	246.899

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Cca05g00628	05	14813580	14817543	Cca05g00628	05	14813580	14817543	ECH