Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00626 ATGTCATCAAAGGAAAGCATGTATGGACCAAAAAATATCCTCATAACTGGAGCAGCTGGTTTCATAGCCTCCCATGTCACTACTAGGCTAATTAACAAGTACCCTTGCTACAAGATTGTGGCTCTTGACAAGCTAGATTATTGTTCCACTTTCAAGAATTTGCAGTCATGTAGTTCATCACCAAAGTTCAAATTCATCAAGGGTGATATAGCTAGTGCTGACATTGTGAATCACATTTTGATAGAAGAGGAAATTGACACCATTATGCATTTTGCTGCTCAAACACATGTGGACAATTCATTTGGAAACTCCATGGAATTCACCTACAATAACATCTATGGCACTCATGTGCTCCTTGAAGCCTGCAGGGTCACCAATTGTGTCAAAAGGTTCATTCATGTTAGCACAGATGAAGTGTATGGTGAATCAGACTTAGAGGCTGATATTGGAAACCATGAGGCATCTCAACTTCTACCCACCAACCCTTATTCTGCAACAAAAGCAGGTGCAGAAATGTTGGTGATGGCTTATCACAGGTCTTATGGTCTTCCAATTATAACTTCTAGAGGCAACAATGTTTATGGCCCCAACCAGTACCCAGAAAAGCTTGTTCCTAAGTTCATTCTTCTTGCCATGAAGGGTGAGAAGTTGCCAATTCATGGAGATGGATCCAATGTGAGGAGCTACCTCCATTGTGGGGATGTGGCAGAAGCTTTTGATGTCATACTCCACAAAGGAGAGATTGGCCAAGTTTACAACATTGGTACCAAGAAAGAAAGGAGTGTGCTACATGTGGCAGAGGAAATATGCAAGCTCTTTAAGTTGAATCCTAAAGATGTTATTCAGTTTGTCCAAGATAGGCCTTTCAATGACAAGAGATATTTCCTAGATGATCAAAAGCTCAAAAAACTTGGTTGGGAGGAGAGAACTCCTTGGGAGGAAGGACTCAAGATGACAATTGATTGGTACAAAAAGAACCCTGATTGGTGGGGTGATGTGTCCACTGCCTTAAACCCTCATCCAAGATTCTCAGCCATCAATCTCTCTGATGAGGCTCAATGGTCCTTCCAATATGGATACTCAAGGCTTGCAAGGTCATTTACTGAAATTGGTAGAAGCAAATCAGGGTTGAAGTTCTTGATATATGGTAGGACAGGTTGGATAGGGGGGTTGTTGGGAAAGATTTGTGATGAAGAGAGGATCAATTGGGAATATGGGAGAGGAAGATTGGAAGATAGGAAATCACTTATGGAGGATATAAGGAGGGTGATGCCAACCCATGTATTGAGTGCAGCTGGTGTTACTGGAAGGCCTAATGTGGATTGGTGTGAATCACACAAGGTTGAAACAATAAGGACCAATGTGGTGGGAACTTTAACACTGGCTGATGTTTGCAAGGAACATGGTTTATATATGATGAATTTTGCAACTGGTTGCATATTTGAGTATGATAAAGAGCACCCTCTAGGATCAAGCATTGGGTTCAAGGAGGAGGACAAGCCAAATTTCATTGGTTCCTTCTATTCAAAGACCAAGGCCATGGTGGAGGACCTTCTAAGGAATTATGAGAATGTGTGCACATTGAGAGTTAGAATGCCAATATCATCAGATCTTAGCAATCCAAGAAACTTCATCACAAAGATCTCCCGTTACAACAAGGTGGTAAACATACCTAATAGCATGACAGTGCTAGATGAGCTCTTACCCATATCCATTGAAATGGCTAAAAGAAACTTAAGAGGGATATGGAACTTCACCAACCCTGGTGTCATTAGCCACAATCAGATATTAGAATTGTATAGAGAATACATAGACCCCAAATTTAAATGGGAGAATTTTGATTTGGAAGAACAAGCAAAGGTAATAGTTGCTCCCAGGAGTAACAATGAAATGGATGCTTCCAAACTCAAAAATGAGTTCCCAGATTTGTTGTCCATCAAAGATTCCATTATCAAGTTTGTCTTTGAGCCTAACAAGAAAACTTGA 1986 0.4074 MSSKESMYGPKNILITGAAGFIASHVTTRLINKYPCYKIVALDKLDYCSTFKNLQSCSSSPKFKFIKGDIASADIVNHILIEEEIDTIMHFAAQTHVDNSFGNSMEFTYNNIYGTHVLLEACRVTNCVKRFIHVSTDEVYGESDLEADIGNHEASQLLPTNPYSATKAGAEMLVMAYHRSYGLPIITSRGNNVYGPNQYPEKLVPKFILLAMKGEKLPIHGDGSNVRSYLHCGDVAEAFDVILHKGEIGQVYNIGTKKERSVLHVAEEICKLFKLNPKDVIQFVQDRPFNDKRYFLDDQKLKKLGWEERTPWEEGLKMTIDWYKKNPDWWGDVSTALNPHPRFSAINLSDEAQWSFQYGYSRLARSFTEIGRSKSGLKFLIYGRTGWIGGLLGKICDEERINWEYGRGRLEDRKSLMEDIRRVMPTHVLSAAGVTGRPNVDWCESHKVETIRTNVVGTLTLADVCKEHGLYMMNFATGCIFEYDKEHPLGSSIGFKEEDKPNFIGSFYSKTKAMVEDLLRNYENVCTLRVRMPISSDLSNPRNFITKISRYNKVVNIPNSMTVLDELLPISIEMAKRNLRGIWNFTNPGVISHNQILELYREYIDPKFKWENFDLEEQAKVIVAPRSNNEMDASKLKNEFPDLLSIKDSIIKFVFEPNKKT 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00626 661 Pfam GDP-mannose 4,6 dehydratase 14 319 IPR016040 -
Cca05g00626 661 Gene3D - 13 317 - -
Cca05g00626 661 CDD dTDP_HR_like_SDR_e 378 650 - -
Cca05g00626 661 CDD dTDP_GD_SDR_e 11 328 IPR005888 GO:0008460|GO:0009225
Cca05g00626 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 334 IPR036291 -
Cca05g00626 661 Gene3D - 204 326 - -
Cca05g00626 661 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 375 652 IPR036291 -
Cca05g00626 661 Pfam RmlD substrate binding domain 378 548 IPR029903 -
Cca05g00626 661 Gene3D - 369 661 - -
Cca05g00626 661 PANTHER TRIFUNCTIONAL UDP-GLUCOSE 4,6-DEHYDRATASE/UDP-4-KETO-6-DEOXY-D-GLUCOSE 3,5-EPIMERASE/UDP-4-KETO-L-RHAMNOSE-REDUCTASE RHM3-LIKE 1 659 - -
Cca05g00626 661 PANTHER DTDP-D-GLUCOSE 4,6-DEHYDRATASE-RELATED 1 659 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00626 Cca-Chr5 14783705 14786916 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00626 12 323 Miscellaneous Gene Families AT1G02000 25.075 3.06e-19 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00626 K12450 - gmx:100776241 1294.64
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00626 05 14783705 14786916 Cca05g00626 05 14783705 14786916 ECH