Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00620 ATGCTTCGGACTCACATTCACGTTTTCTCTTCCTTCGCCGCTCCACTCCATCATTCCTCGCGCGTCCGTTCCTCTTCTCTTCCGACACGGCGTCGTTTGGCGAGGACCGCCACCACGACTCACGAGGCCAATCTCAAGCACCTCACTTCGCGCATTGTGCAGCTCACTCGCCGAAAGCAGCTTCGCCAGATTTTGGACGAGGTTGAAGCTGCGAAGAGGCATTTCGGGAAGCTTAACACGATAGTGATGAACGCGGTGATGGAGGCTTGTGTGCGTTGCGGTGACATCGATTCGGCGCTCAGGATTTTCGATGAGATGAAGAAGCGCGATGCTTGCGGTGTGGATACTGTCTCCTATGCCACGCTTTTGAAGGGGTTAGGTGAGGCACGAAGAGTTGATGAGGCTTTTGAATTGCTTGAAACTGTGGAAAATGGCACTGCTGCAGGAAGCCCAAACTTGTCAGCTCCATTGATCTTGGGTCTGCTAAATGCCTTAATTAAAACAGGAGACTTGCGTCGTGCAAATGGTCTCCTTGCCCGTTATGGTTTTGTGCTTCGTGAAGGTGGCAATTTTTCAGTCTCAGTATACAACATACTAATGAAGGGCTACATAAACTCAGGCTGTCCACACACTGCAATAAACATGCTCAATGAAATTTTACGTCAAGGCATAATGCCTGACAGGCTCACATATAACACACTAATTTTAGCATGTGTCGAGAGTAAAAAGTTGGACGTTGCAATGCAATTTTTTGAGGAAATGAAGGGCAAAGCACAGAAATTCGTCAATAATGATCTGTTTCCAGATATTGTTACATATACAACAATGCTTAAGGGTTTTGCACAGGAAAAGGATCTTGCTTCAGTTCTGAAAATAGTGCTGGAAATGAAATCTTATCGGGAATTATACATCGATAGAACTGCTTACACAGCAATAATTGACGCTTTACTAAAATGTGGCTCAGTTAAAGATGCTCTGTGTATTTTTGGAGAGATACTGAAGCAGGCTGGTCTGAATCCGGAGTTGAGGCCAAAGCCTCATCTCTACCTTTCCATGATGCGTGCCTTTGCTTTTCTGGGAGATTATGATCTTGTTAAAAATTTTCATAAACGGATTTGGCCAGATTCAGCAGGAACCATATTATTAGTTGCTCAAGAAGAAGCTGATCACCTTCTCATGGAAGCAGCACTGAATGCTGGCCAGGTTGATGTTGCCATTAAAACTCTTACAGAGATTGTTTCAAGATGGAAAGGCATATCTTGGACAAGTCGTGGGGGCATGGTTGCTTATCGTATTGAGGCCTTATTGGGATTCTCAAAGTCATTATTCAGTCCTCACTTACTTCCTCAGGTTTCACCTTCTGAACCAGTTGAAAATTATATGATACGATTTGATGCGACACGGCCACTACAAGGTACCATAAAGCTGAGGAAAGTGGTTATGCGTTTCTTTGATGAAGCAGTTGTTCCTATTGTAGATGAGTGGGGCAGTTGTACAGGGCTGTTATACCGTGAAGACTGCAAACAGTTGGATGCTCAAGTTTCAACAATGATGAGAAGTCCTCCTCCCAGTGTTACGACTTCAACATCCGTTGGCCATGTAGTTGATTTAATTTTAGAGAAGCGATACCCAATGATTATCATTGTAAATTACTCAAATTCATATGCTACTGCTCCATACAGCTCTAGAGCAGTTGGAGTTTTTACACTAAAACAATTGAGTAGCCTTATCACTCCTGTATCTCGAGTAAAAGGGACAGACCTTTCAGTCTACAACATAAGGTAA 1785 0.4381 MLRTHIHVFSSFAAPLHHSSRVRSSSLPTRRRLARTATTTHEANLKHLTSRIVQLTRRKQLRQILDEVEAAKRHFGKLNTIVMNAVMEACVRCGDIDSALRIFDEMKKRDACGVDTVSYATLLKGLGEARRVDEAFELLETVENGTAAGSPNLSAPLILGLLNALIKTGDLRRANGLLARYGFVLREGGNFSVSVYNILMKGYINSGCPHTAINMLNEILRQGIMPDRLTYNTLILACVESKKLDVAMQFFEEMKGKAQKFVNNDLFPDIVTYTTMLKGFAQEKDLASVLKIVLEMKSYRELYIDRTAYTAIIDALLKCGSVKDALCIFGEILKQAGLNPELRPKPHLYLSMMRAFAFLGDYDLVKNFHKRIWPDSAGTILLVAQEEADHLLMEAALNAGQVDVAIKTLTEIVSRWKGISWTSRGGMVAYRIEALLGFSKSLFSPHLLPQVSPSEPVENYMIRFDATRPLQGTIKLRKVVMRFFDEAVVPIVDEWGSCTGLLYREDCKQLDAQVSTMMRSPPPSVTTSTSVGHVVDLILEKRYPMIIIVNYSNSYATAPYSSRAVGVFTLKQLSSLITPVSRVKGTDLSVYNIR 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00620 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 261 IPR002885 -
Cca05g00620 594 CDD CBS_pair_SF 473 550 - -
Cca05g00620 594 Pfam PPR repeat 308 334 IPR002885 -
Cca05g00620 594 Gene3D Tetratricopeptide repeat domain 31 146 IPR011990 GO:0005515
Cca05g00620 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 269 299 IPR002885 -
Cca05g00620 594 Gene3D Tetratricopeptide repeat domain 261 434 IPR011990 GO:0005515
Cca05g00620 594 ProSiteProfiles CBS domain profile. 517 588 IPR000644 -
Cca05g00620 594 TIGRFAM PPR: pentatricopeptide repeat domain 83 110 IPR002885 -
Cca05g00620 594 TIGRFAM PPR: pentatricopeptide repeat domain 308 340 IPR002885 -
Cca05g00620 594 TIGRFAM PPR: pentatricopeptide repeat domain 117 140 IPR002885 -
Cca05g00620 594 TIGRFAM PPR: pentatricopeptide repeat domain 230 255 IPR002885 -
Cca05g00620 594 TIGRFAM PPR: pentatricopeptide repeat domain 195 227 IPR002885 -
Cca05g00620 594 TIGRFAM PPR: pentatricopeptide repeat domain 271 299 IPR002885 -
Cca05g00620 594 Pfam Pentatricopeptide repeat domain 259 298 IPR002885 -
Cca05g00620 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 79 109 IPR002885 -
Cca05g00620 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 192 226 IPR002885 -
Cca05g00620 594 PANTHER OS09G0431600 PROTEIN 16 586 IPR044781 -
Cca05g00620 594 Gene3D Tetratricopeptide repeat domain 159 260 IPR011990 GO:0005515
Cca05g00620 594 SUPERFAMILY CBS-domain pair 456 553 IPR046342 -
Cca05g00620 594 Pfam PPR repeat family 79 126 IPR002885 -
Cca05g00620 594 Pfam PPR repeat family 193 238 IPR002885 -
Cca05g00620 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 115 145 IPR002885 -
Cca05g00620 594 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 340 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00620 Cca-Chr5 14541387 14570171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00620 161 462 Miscellaneous Gene Families AT4G11690 24.756 4.29e-12 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00620 - - gmx:100813146 993.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00620 05 14541387 14570171 Cca05g00620 05 14541387 14570171 ECH