Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00613 ATGCAACCCCAGCTGAGCTCGAGAATCAATTTGGCCGAATTGAAAGCGCAGATTGTGAAGAGAATTGGAACGGATAAGTCTAAGCGGTACTTTTATTACTTGAACCGTTTTCTGAGTCAGAAGCTGAGCAAGACTGAATTCAACAGGTCATGTTATAGGGTGCTTGGCAGGGAGAATATTCCATTACACAATCACTTTATAACGTCAATTTTGAAGAATGCCTACCAAGCCAAGACCCCACCACCGCCAGCCCAGTTGACAGGTCCTCCCAAATTAGGAGCACTTGCCAATAATGTATCTCCTGGAAGAGAGGATGGACATGAACAGAGTGTCACTAACTTCCAAACTCCGAATGCTTCCATTTGGTCCAATGGGGTTTTGCCAGTTTCCCCACGTAAGTTAAGGTCTGGAGTGCATCGCAAGCTTAAAGATAGGCCAAGCCCCCTTGGACCAAATGGAAAAGTTGATTCAGTTGCTCATCAATCCACAGCTACAGAAGATAGTGGTAGTAAGGTTGATATGGAGAATGGAATTCGTACTCCATGTGATTATCAGAGATCTATGCAGCATCTTCAGGCAGTTGATGAGCTACCTGAGAATGGTATGGGGGATGTTATTCAAATACCTGCACAAAAACCAAGAATACATGGCAAGGGGCCAACTGCAGTATCAATTGTTGAAGATGGGGAAGAGGTGGAGCAGTTAAACCGCCTCAATTTCTCTAGAAGTCCCTTGATAGCACCGCTTGGGATCCCTTATTGCACTGCAAGTGTTGGTGGGGCCCGCAAAGCATTGCCAGTGAATAGCACTGGTGATTTTATTAGTTGTTGTGACAATGGTAGGTTATCTGATACAGATACATTGAGAAAGCGCATGGAGCAGATCGCTACAGTGCAGGGTCTAGGAAGTGTTTCTATGGAATGTGCAAATACATTGAATAATGTTTTAGATGTTTACTTGAAACGGTTGATCAGATCTTGTATTGATTTAGTGGGAGCTAGGTCTCCAAATGAGCCAAGGAAACAACCTGTCTCGAAACAGCAGATTCAGGGGAAAGTCATTAATGGTGTCTGGCCAAATAATCCTTTACATGTGCAGAGTGCTTGTGGGATGGCAGAACCCGAGCCTGAGCACAGATCACCAGTCTCGGTATCTTTACGTGATTTTAAGGTTGCTATGGAGCTAAATCCACAGCAACTTGGAGAAGATTGGCCGCTACAGTTGGAGAAAATTTCTATGCAATCATTTGAGGAATAA 1257 0.4415 MQPQLSSRINLAELKAQIVKRIGTDKSKRYFYYLNRFLSQKLSKTEFNRSCYRVLGRENIPLHNHFITSILKNAYQAKTPPPPAQLTGPPKLGALANNVSPGREDGHEQSVTNFQTPNASIWSNGVLPVSPRKLRSGVHRKLKDRPSPLGPNGKVDSVAHQSTATEDSGSKVDMENGIRTPCDYQRSMQHLQAVDELPENGMGDVIQIPAQKPRIHGKGPTAVSIVEDGEEVEQLNRLNFSRSPLIAPLGIPYCTASVGGARKALPVNSTGDFISCCDNGRLSDTDTLRKRMEQIATVQGLGSVSMECANTLNNVLDVYLKRLIRSCIDLVGARSPNEPRKQPVSKQQIQGKVINGVWPNNPLHVQSACGMAEPEPEHRSPVSVSLRDFKVAMELNPQQLGEDWPLQLEKISMQSFEE 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00613 418 MobiDBLite consensus disorder prediction 133 176 - -
Cca05g00613 418 PANTHER TRANSCRIPTIONAL REGULATOR OF RNA POLII, SAGA, SUBUNIT 1 418 - -
Cca05g00613 418 PANTHER TRANSCRIPTIONAL ADAPTER 1 1 418 IPR024738 GO:0070461
Cca05g00613 418 MobiDBLite consensus disorder prediction 156 170 - -
Cca05g00613 418 Pfam Transcriptional regulator of RNA polII, SAGA, subunit 6 331 IPR024738 GO:0070461
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00613 Cca-Chr5 14251300 14252556 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00613 - - gmx:100811524 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00613 05 14251300 14252556 Cca05g00613 05 14251300 14252556 ECH