Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00602 aTGGGTTTCCGAAGCTCTTCTCTTCTCTGCATGGCTATTTTGCTTGCATGCTCTTCCGCTATTTACGCCTTTGACATCACAAAAACTCTCAGCAAATATCCAAAATTTGAGTCACTCAACAAATACCTCACCGAAACCAAGCTTGCAGAACAAATGAACAGCCGCAACACCATCACTCTCCTCGCCGTTGATAACGGCGGTTTCTCTGCCATCGCTAACAAGTCCCCAGAAACCATTAAGGCCATCATCAGCACCCATGTCATCCTTGACTACTATGATCCCAAGAAGCTCGTCGAAGCCATTGGCAACAAGGAACAACTAACCACCCTCTACCAATCCTCAGGCAAAGCCGTCAACAATCAAGGCTTCCTCACCGTTTCCATGGTCGGTGAAGGCGAGATCGCCTTCGGCTCCGCCGTCAAAGGCGCCCCCGCCGATGATGCCGAGTTTGTCGAGCCCATCACCTCTGAGCCCTACAACATCTCCATTATCCATGTCACCAAGTTCATCATACCCCCGGGCATTGACTCTCAAGCTAAGGCACCAGCTCCGTCGGGACAGACTGCCAAAGCTCCTGTGTCGACTAAGGCTGCCAAGGCCCCAGCTCCGACACAGGCTGCTAAGGACTCTGCCCCGACACCAAGTGCCAAGGCACCAATTCCATCGGAGACTGCAGCTACACCTACAGCTGAGTCTCCGGTGGACGCTGCTGATGCCTCAGCAACAAGCCCATCAGCTGAGGGACCAGGTCCCGCAGCTGATGATGGAGCTGCAGATGCTGCTTCTGCTAGCAGCCCTTCTACCACTAAAATGGGTGTCGTTGGGGTAGTGATGGCTTTCGCTTCCCTCTTCATTGTCTTGTAA 864 0.5301 MGFRSSSLLCMAILLACSSAIYAFDITKTLSKYPKFESLNKYLTETKLAEQMNSRNTITLLAVDNGGFSAIANKSPETIKAIISTHVILDYYDPKKLVEAIGNKEQLTTLYQSSGKAVNNQGFLTVSMVGEGEIAFGSAVKGAPADDAEFVEPITSEPYNISIIHVTKFIIPPGIDSQAKAPAPSGQTAKAPVSTKAAKAPAPTQAAKDSAPTPSAKAPIPSETAATPTAESPVDAADASATSPSAEGPGPAADDGAADAASASSPSTTKMGVVGVVMAFASLFIVL 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00602 287 ProSiteProfiles FAS1/BIgH3 domain profile. 23 171 IPR000782 -
Cca05g00602 287 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 1 266 IPR033254 -
Cca05g00602 287 MobiDBLite consensus disorder prediction 177 268 - -
Cca05g00602 287 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Cca05g00602 287 Gene3D FAS1 domain 23 173 IPR036378 -
Cca05g00602 287 SUPERFAMILY FAS1 domain 30 119 IPR036378 -
Cca05g00602 287 Pfam Fasciclin domain 35 121 IPR000782 -
Cca05g00602 287 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 1 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00602 Cca-Chr5 13803049 13804650 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00602 - - gmx:100798739 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00602 05 13803049 13804650 Cca05g00602 05 13803049 13804650 ECH