Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00596 ATGGGCACTGCACTGAACCTCTGTGTTAGTTTCAATCCTGCTCAAGGTAAAAAATGCAAGTTCGAAGGTCAATCAGTGAGAGCACTTCCTATACGAATATTATCAGTGGGGAAGAAGCGATCACGTGGACTACAACTCATGGTTGATGAGTATGTTGATAAGCTCAGGTACTATTGCAGTGTTGAGGATGTTCAAGTAAGGCCAAATCCTCGAAATGCACGTGACCAAAAGGCTCAGGTTGATGCTGAAGACGAGGCGGTGATGAACCTTATAAGGTCTGATGATTGGGTTGTGATGTTGGATGAACGTGGGCAAGACATAGGATCTGAGCAAATGGCAGAGTTGGTGGGTGATGCAGGAAATACTGGTGCTTCACGATTATCCTTTTTAATCGGTGGACCATATGGTCATGGAAGAAAAATGCGGGAACGGGCTAACTTATCAATCAAGTTATCTTCACTGGTCTTAAATCATCAAATAGCATTACTTGTGCTCATGGAACAGCTTTACAGGTCATGGACAATTTTAAAAGGACAAAAGTACCATCATTAG 552 0.4275 MGTALNLCVSFNPAQGKKCKFEGQSVRALPIRILSVGKKRSRGLQLMVDEYVDKLRYYCSVEDVQVRPNPRNARDQKAQVDAEDEAVMNLIRSDDWVVMLDERGQDIGSEQMAELVGDAGNTGASRLSFLIGGPYGHGRKMRERANLSIKLSSLVLNHQIALLVLMEQLYRSWTILKGQKYHH 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00596 183 SFLD SPOUT Methyltransferase 16 183 - -
Cca05g00596 183 PIRSF MT_bac 29 183 IPR003742 GO:0006364|GO:0008168
Cca05g00596 183 Gene3D - 30 183 IPR029026 -
Cca05g00596 183 SUPERFAMILY alpha/beta knot 30 181 IPR029028 -
Cca05g00596 183 PANTHER METHYLTRANSFERASE 9 183 IPR003742 GO:0006364|GO:0008168
Cca05g00596 183 CDD RlmH-like 31 183 IPR003742 GO:0006364|GO:0008168
Cca05g00596 183 Hamap Ribosomal RNA large subunit methyltransferase H [rlmH]. 29 183 IPR003742 GO:0006364|GO:0008168
Cca05g00596 183 Pfam Predicted SPOUT methyltransferase 31 182 IPR003742 GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00596 Cca-Chr5 13674951 13679566 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00596 K00783 - gmx:100796609 353.984
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00596 05 13674951 13679566 Cca05g00596 05 13674951 13679566 ECH