Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00593 ATGGCGTTGCTTTCCAAGGTATCATCCTCACTTCTACTATCTCCCAAACGCACCATCACCAACGCGTTTCTGCGTTCTCCTTCTCGTTCGTCCGCCACCACCGTCACAAAGAACAAGAACGCAAAAGCTGCGTTGGCCAAGGAGAAGCGCAGGACGCGTTCCGACAAGCAATTCGCCCTAAATGAGATGACCACCAACTCCTCTCACATTCCCGTCATGCTCGCCGAGGTCCTCGACGTCTTCTCCGCCGCCCCCCTAACCTCCTTCGTCGACTGCACCCTCGGCGCCGCCGCCCACTCTGCCGCCGTCATTAGGGCCCATCCCGAGTTGAGCTTTTTCCTCGGAATGGACGTCGACTCTGCCGCGCACCACCTCGCGCAGCCTCGCCTCGACGCCGTTTTAAGCGGCGCTGAGGTCAAAGCGGTCACCGTTTTGAGGAATTTCAGACATGTCAAGTCTGTGTTGAGAGAAAGCGGTGAGATGCAATTGGGGGTTGATGGCATCTTAATGGACTTGGGAATGTCCTCTATGCAGGTGGACGATCCTGCAAGAGGATTCAGTGTGCTCAATGATGGACCCCTTGATATGCGGATGGATCCTCAGGCAAGTCTTAAAGCAGAAGACATATTAAATTCCTGGCCAGATTCTGAAGTGGGACGCATCCTAAGGGAGTATGGGGAAGAAAGTAATTGGCGAACTCTGCAAAAGAAAATTGTTGATGCCCGGTTACATGGCGGGTTGCATTCGACAAGTGACTTGCTAGATCTCGTTCGGCGTGTTACACCTCCAATGAGAGGTGGAAGGCAAGGTTGGATAAAGACAGCAACGCGGGTGTTTCAAGCTCTGAGAATCGCTGTTAATGATGAACTGAAGACACTTGAGGATTCCCTCTATTCTTGTTTTGATTGCCTTGCACCTGGGGGTAGGCTTGCTGTCATATCTTTTCATAGTCTAGAGGACAGAATTGTGAAGCAGACATTTCTTGATATCATTAAAGGGAGCGAAGATGTGGACGGAAGGGATTTGAAGAAGACTAGTGATGAAATCAAAGAAAAAGAAACATGGATAAAACAAGTAATACATGGATCAAATGGAATAATTCTCACAAAAAGACCAATCACGCCGTCAGGAGAAGAAGAAAAACTGAACCGCAGAAGTAGAAGTGCAAAGCTTAGAGTTATTCAGAAGCATTGA 1194 0.4933 MALLSKVSSSLLLSPKRTITNAFLRSPSRSSATTVTKNKNAKAALAKEKRRTRSDKQFALNEMTTNSSHIPVMLAEVLDVFSAAPLTSFVDCTLGAAAHSAAVIRAHPELSFFLGMDVDSAAHHLAQPRLDAVLSGAEVKAVTVLRNFRHVKSVLRESGEMQLGVDGILMDLGMSSMQVDDPARGFSVLNDGPLDMRMDPQASLKAEDILNSWPDSEVGRILREYGEESNWRTLQKKIVDARLHGGLHSTSDLLDLVRRVTPPMRGGRQGWIKTATRVFQALRIAVNDELKTLEDSLYSCFDCLAPGGRLAVISFHSLEDRIVKQTFLDIIKGSEDVDGRDLKKTSDEIKEKETWIKQVIHGSNGIILTKRPITPSGEEEKLNRRSRSAKLRVIQKH 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00593 397 Hamap Ribosomal RNA small subunit methyltransferase H [rsmH]. 69 397 IPR002903 GO:0008168
Cca05g00593 397 Pfam MraW methylase family 67 396 IPR002903 GO:0008168
Cca05g00593 397 Gene3D Putative methyltransferase TM0872, insert domain 182 289 IPR023397 GO:0008168
Cca05g00593 397 TIGRFAM TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 64 396 IPR002903 GO:0008168
Cca05g00593 397 SUPERFAMILY Putative methyltransferase TM0872, insert domain 184 287 IPR023397 GO:0008168
Cca05g00593 397 Gene3D Vaccinia Virus protein VP39 69 394 IPR029063 -
Cca05g00593 397 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 69 396 IPR029063 -
Cca05g00593 397 PANTHER S-ADENOSYL-METHYLTRANSFERASE MRAW 53 396 IPR002903 GO:0008168
Cca05g00593 397 MobiDBLite consensus disorder prediction 30 55 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00593 K03438 - gmx:100803819 595.89