Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00590 ATGGCTACCACACCGCAATGGGAATTCTCCTGTGACATGGAAATAGATTTTGGATCTGAAGAGAATGCTTCCATTGTATTTTCTGCCTTAGCCGTTGACAAAGAGTTGCAACCCGATAAAGTAAAACGACTCATGACAGTGTCTGATGGAAAGCTATCAGCGCACTTTGAGGCAACAGAAGCCAGGTTTCTCCGGGCATCATTTAGTGCTTTTGTAGATGTCATGACACTAGCCACGAAAACTATTGAAGAATTTGGTCAAGGAATGAAGTTGTGA 276 0.4275 MATTPQWEFSCDMEIDFGSEENASIVFSALAVDKELQPDKVKRLMTVSDGKLSAHFEATEARFLRASFSAFVDVMTLATKTIEEFGQGMKL 91
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00590 91 PANTHER GEO08993P1 3 89 - -
Cca05g00590 91 Pfam Transcription factor Pcc1 10 83 IPR015419 -
Cca05g00590 91 Gene3D - 2 89 - -
Cca05g00590 91 PANTHER EKC/KEOPS COMPLEX SUBUNIT PCC1 FAMILY MEMBER 3 89 IPR015419 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00590 Cca-Chr5 13563128 13567260 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00590 K15902 - gmx:100527271 165.236