Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00585 ATGGCTCCTCCCAGAGGTCGTGGTGGGTTCAGAGGTGGCAGGGGTGACAGAGGTAGAGGAAGGGGTGGTGGAGGAAGAGGAGGAGGAGACAGGGGTACACCATTCAAGGCTAGGGGTGGTGGTAGAGGTGGAGGCAGGGGTGGTGGACGTGGAGGAGGTAGGGGTGGTGGAATGAAAGGTGGGAGCAAAGTTGTTGTTCAACCCCACAGACATGATGGTATTTTTATTGCTAAGGGTAAAGAAGATGCCCTTGTTACCAAGAATCTTGTTCCTGGTGAAGCTGTTTATAATGAGAAAAGGATTACTGTTCAGAAGGAGGATGGTTCAAAGGATGAGTACAGAGTTTGGAACCCTTTCCGCTCTAAGTTGGCTGCTGCTATTCTTGGTGGAGTTGACAACATATGGATTAAACCTGGAGCCCGAGTCCTTTACCTAGGTGCTGCTTCTGGGACTACTGTTTCTCATGTGTCGGATGTTGTTGGCCCAACAGGAGTTGTCTATGCAGTGGAATTTTCTCACAGAAGTGGGCGTGACTTGGTCAATATGGCTAAGAAACGCACTAATGTTATACCTATTATTGAAGATGCTAGACATCCAGCTAAGTACAGGATGTTGGTTGGTATGGTTGATGTCATATTTTCTGATGTTGCCCAGCCTGATCAGGCAAGAATTTTGGGACTGAATGCTTCTTATTATCTCAAAGCCGGAGGTCATTTTGTTATTTCAATCAAGGCCAATTGCATAGACTCGACAGTCCCTGCTGAGGCAGTGTTTGAAAGTGAAGTGAACAAGTTGAAGGCAGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCTTGTGTGGTTGGTGGATACAGAGTGCCCAAGAAGAAAAAAGATGCCGCTTAG 909 0.4708 MAPPRGRGGFRGGRGDRGRGRGGGGRGGGDRGTPFKARGGGRGGGRGGGRGGGRGGGMKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQKEDGSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRVPKKKKDAA 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00585 302 PIRSF Nop17p 35 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 66 293 IPR029063 -
Cca05g00585 302 Gene3D Phosphorylase Kinase; domain 1 61 116 - -
Cca05g00585 302 SMART Fibrillarin_2 66 294 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 Gene3D Vaccinia Virus protein VP39 117 294 IPR029063 -
Cca05g00585 302 PRINTS Fibrillarin signature 84 103 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PRINTS Fibrillarin signature 112 131 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PRINTS Fibrillarin signature 139 160 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PRINTS Fibrillarin signature 164 181 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PRINTS Fibrillarin signature 189 218 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PRINTS Fibrillarin signature 219 248 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PRINTS Fibrillarin signature 271 292 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 80 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 Pfam Fibrillarin 66 293 IPR000692 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 6 301 - -
Cca05g00585 302 MobiDBLite consensus disorder prediction 1 64 - -
Cca05g00585 302 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 6 301 - -
Cca05g00585 302 ProSitePatterns Fibrillarin signature. 164 178 IPR020813 GO:0003723|GO:0006364|GO:0008168
Cca05g00585 302 MobiDBLite consensus disorder prediction 10 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00585 Cca-Chr5 13492705 13496557 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00585 K14563 - gmx:100797625 499.204