Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00577 ATGAAGCTTAAAAGGTGGCTCACGTGTGTTTCATTCCTCATTGTTGCCACAGTGAGCAATGCAGTTGGTGCATTTGTGGGGGTGAATATTGGCACTGATGTTACTGATCTGCCATCTGCTTCAAACGTGGTTGCAATTCTAAAAGCACATCAAATTAGACACGTGCGTCTGTATAATGCCAATGAGCACATGCTACAAGCCCTTTCAAACACTGGCATTGAGATAATTGTTGGTGTCACAGATGAAGAGATACTTGGCATTGGAGAATCTGCATCAGTTGCTGCAGCATGGATTAGTAAGAATGTGGCTGCTTATATGCCATCCACAAACATCACAGCATTATCAGTTGGCAGTGAGGTTCTCACCTCAGTTCCAAATGTTGCACCTGTTCTGGTTCCTGCCATGAACCACCTTCACAAAGCACTAGTTGCTTCAAACCTTAACTTTAGGGTTAAGGTTTCAACACCACAGTCCATGGACATAATTTCTAGGCCTTTTCCTCCTTCTACAGCCACCTTTAACTCTTCATGGAACTCCACAATCTACCAACTCCTTCAGTTTTTGAAGAACACAAATTCCTCTTACATGTTAAATGCCTACCCTTACTATGGATACACTAAAGGAGATGGCATTTTCCCTATTGAATATGCTCTATTCAGACCCCTTTCTCCAGTGAAGCAAATTGTTGATCCAAACACACTATTCCATTATAATAGCATGTTTGAGGCTATGGTGGACGCTACCTATTATGCTATAGAAGCCTTCAATTTCAATGATATACCTGTTGTTGTCACAGAGACTGGTTGGCCAAGTTTTGGTGGAACATATGAACCAGATGCTACTACAAATAATGCTGAGACCTATAATAATAATTTAATTGTGAGAGTACTCAATGGTTCAGGTCCCCCTAGTCAGCCAAAGATGGCCATTAACACCTACCTATATGAATTATTTAATGAGGACAAGAGGAAAGGTCCTATATCTGAAAAGAATTGGGGTGTTTTTTATACTAATGGAAGTAGTGTGTATTCTTTGAGTTTTGGTGCTTCCAACATGAGTAATGGAAATTCTCTGGGGTCTTTTTGTGTGGCTAAAGATGATGCAGACACTGATAAATTGGAAGCTGGCTTGAACTGGGCTTGTGGACAAGGCCAAGCTAACTGTGTAGCTATTCAACAAGGAAGACCATGCTATTCCCCCAATAACCTGAAAAGCCATGCATCTTATGCTTATAATGATTATTATCAAAAAATGCATAATGCTGGTGGAACATGTGACTTTGATGGTACAGCTATAACTACTACCGAGGATCCTAGTTATGGGTCCTGTATATATGCGGGAAGTGCAAACTCAAGCATTGGTGGAAGGAGTTCATCTTCTACAGCACTTGGATTTGGACCTGGACCTGTAAGTCCTGTTGGAGGTAGTTGGAACCTGCACGTGTCCACCCTTCAGTATTTGATGTCGTCTATTAGTGTATTTTTTGCTATGGTGTTGTCATGA 1503 0.4112 MKLKRWLTCVSFLIVATVSNAVGAFVGVNIGTDVTDLPSASNVVAILKAHQIRHVRLYNANEHMLQALSNTGIEIIVGVTDEEILGIGESASVAAAWISKNVAAYMPSTNITALSVGSEVLTSVPNVAPVLVPAMNHLHKALVASNLNFRVKVSTPQSMDIISRPFPPSTATFNSSWNSTIYQLLQFLKNTNSSYMLNAYPYYGYTKGDGIFPIEYALFRPLSPVKQIVDPNTLFHYNSMFEAMVDATYYAIEAFNFNDIPVVVTETGWPSFGGTYEPDATTNNAETYNNNLIVRVLNGSGPPSQPKMAINTYLYELFNEDKRKGPISEKNWGVFYTNGSSVYSLSFGASNMSNGNSLGSFCVAKDDADTDKLEAGLNWACGQGQANCVAIQQGRPCYSPNNLKSHASYAYNDYYQKMHNAGGTCDFDGTAITTTEDPSYGSCIYAGSANSSIGGRSSSSTALGFGPGPVSPVGGSWNLHVSTLQYLMSSISVFFAMVLS 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00577 500 Gene3D - 356 453 - -
Cca05g00577 500 Gene3D Glycosidases 25 354 - -
Cca05g00577 500 SUPERFAMILY (Trans)glycosidases 26 347 IPR017853 -
Cca05g00577 500 PANTHER O-GLYCOSYL HYDROLASE FAMILY 17 PROTEIN 2 469 - -
Cca05g00577 500 Pfam X8 domain 361 431 IPR012946 -
Cca05g00577 500 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 2 469 IPR044965 GO:0004553|GO:0005975
Cca05g00577 500 SMART X8_cls 360 445 IPR012946 -
Cca05g00577 500 Pfam Glycosyl hydrolases family 17 26 347 IPR000490 GO:0004553|GO:0005975
Cca05g00577 500 ProSitePatterns Glycosyl hydrolases family 17 signature. 260 273 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00577 Cca-Chr5 13377555 13381365 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00577 1 481 Glycoside Hydrolase AT3G13560 64.669 0.0 653
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00577 K19892 - gmx:100779131 902.894