Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00563 ATGGCGTCAATGAATTTATTCTCCGCCGTTTCCGCCACCTTTGACGGCCGAACTCCGAGCACCTATCTCCCCCGGCGGCGACCAATCTCCGTCCCTTTCGCCGCCTCTTCGCCGGAATCTGCTCCCGAAATAGAGCTCGAGTTCATCGCGCCGAAAGCGGAGAGTGAGGTGGAGAAAGCGAAAGCAATGAGCGGAGAGAAGCTGTTGAGGAACATCATGTTGGATAACAAGATCGAGCTTTATGCCACATATGGGAAGTTGATGAACTGCGGGGGAGGTGGTAGCTGTGGAACTTGTATCGTAGAGATTATTGAAGGAAAGGAACTTTTAAATGAAAGAACAAATACTGAACTCAAATATCTAAAGAAGGCATTTTTGGAACTTTCTAATCCTTTAAACTTTGGCTATTTTAAACAGAAACCCGAATCTTGGAGGCTGGCATGTCAAACTATTGTTGGAAATAAAGAAAACTCTGGCAAGGTTGTAGTTCAAAGGATTCCTCAATGGAAGAAGTAA 516 0.4554 MASMNLFSAVSATFDGRTPSTYLPRRRPISVPFAASSPESAPEIELEFIAPKAESEVEKAKAMSGEKLLRNIMLDNKIELYATYGKLMNCGGGGSCGTCIVEIIEGKELLNERTNTELKYLKKAFLELSNPLNFGYFKQKPESWRLACQTIVGNKENSGKVVVQRIPQWKK 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00563 171 Pfam 2Fe-2S iron-sulfur cluster binding domain 87 152 IPR001041 GO:0051536
Cca05g00563 171 PANTHER FERREDOXIN/ADRENODOXIN 36 169 IPR001055 GO:0051537|GO:0140647
Cca05g00563 171 Gene3D - 47 170 IPR012675 -
Cca05g00563 171 PANTHER FERREDOXIN-2, MITOCHONDRIAL 36 169 - -
Cca05g00563 171 SUPERFAMILY 2Fe-2S ferredoxin-like 67 154 IPR036010 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00563 Cca-Chr5 12956420 12969577 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00563 - - gmx:100807125 235.343