Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g00562 | ATGCTCTCTCGCTCCCTCAAACCTCGTCACATACTCTTCACTCTCCGTTCATTGCCGTtaatcctcaacccgaaccctaacccaaaccctTCACTCCGATCCTCCCCTCACCGTCAATTCTCTTCTTCATGGCTTTCCGAACCTGGAAACCCAATCATCCAGTGGCCCTCACTTCCCATACCAAACTCCAACCCAACGTCCGAACCTGCTTCTCCCAACCCAGACGCCTTATCCGTCATCGCCAACCTCTTCACCGACCCTTCCGTCTCGCCCGGTCCGCCCCTCCACTCCCGACTCGACCGGTCCGGAATCGAACCGGACCCGCCCCTCCTGCTCGCGGTGTTCGACCGCTTCGGCTCGTCCCCCAAGCTGCTGCACTCGCTCTTCCTCTGGGCCCAGACACGGCCCGCGTTCCAGCCCGGCCCGAAGCTGTTCGACGCCGTGGTCAACGCGCTCGCCAAGGCCAGGGAGTTTGACTCCGCTTGGAAGCTCGTGCTCGATCACGTCGACGGAGGGGAAGGAGAGAGCTTGGTTTCCGTTGGGACCTTCGCTATCATGATTCGGCGCTACGCGCGTGCAGGAATGTCAAAACTTGCAATTAGAACATACGAGTTTGGCAGAAATAACAAGTCAATTGTGGATTCTGGCTCAGGAATGAGTTTGTTTGAGATATTGATGGATTCACTTTGTAAAGAAGGGTCTGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAGAAAGGAGTTGGACTTAGGTTGGGTTCCTTCTATTCGGGTGTATAACATAATGTTAAATGGATGGTTTCGATCGAGGAAACTCAAGCAGGGTGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGTCGCATGCGCCGAATCGAAAAGGCACTTGAAATGGTTGGGGATATGACTAGAGAAGGAATTGAACCAAATGCAATTGTGTATAACCCAATAATTGATGCATTAGCAGAAGCTGGAAGATTTAAAGAGGCCATGGGCATGTTGGAACGTTTTCATGTTCTGGAAATAGGCCCTACTAATTCCACATATAATTCTCTGGTAAAGGGGTTTTGTAAGGCAGGAGATCTTGTAGGTGCTAGTAAGATTCTCAAAATGATGATAAGTAGGGGTTTCCTCCCAAGTCCAACCACCTATAACTATTATTTTAGGTACTTTTCAAGATGTGGGAAAATTGAGGAGGGGATGAACCTGTATACAAAGATGATTGAATCTGGTTATACCCCAGATCGGCTAACTTACCATCTTTTGGTGAAGATGTTATGTGAGGAAGGGAAGTTAGACTTGGCCGTTCAAGTTAGCAAGGAAATGAGACATAATGGGTATGACATGGACTTGGCTACAAGTACCATGTTAATTCATTTGCTTTGCAAAATGCGTAGGTTGGAAGAGGCTTTTGCGGAATTTGAGGACATGATACGGAGGGGTATAGTTCCTCAGTATCTCACTTTTCAGAGAATGAAAGCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAGCTTTGCAAGTTGATGTCTTCTGTTCCCTATTCTACCAACTTGCCAGATACTTATAGTGAAGACAGAGATGATGCACATGGACGAAGAAAATCTATAATTAAGAAAGCCAAAGCATTTTCTGATATGTTGAAGGACTGTAAGGACCCTAGTGAACTTCGTAATAAGTATAGAAGTTCATCAGAAAAAGCTGTCTCAAATGCAAACTGTTTGATAGAGGACAAGGGGGAAAAA | 1797 | 0.4585 | MLSRSLKPRHILFTLRSLPLILNPNPNPNPSLRSSPHRQFSSSWLSEPGNPIIQWPSLPIPNSNPTSEPASPNPDALSVIANLFTDPSVSPGPPLHSRLDRSGIEPDPPLLLAVFDRFGSSPKLLHSLFLWAQTRPAFQPGPKLFDAVVNALAKAREFDSAWKLVLDHVDGGEGESLVSVGTFAIMIRRYARAGMSKLAIRTYEFGRNNKSIVDSGSGMSLFEILMDSLCKEGSVREASEYFLWRKELDLGWVPSIRVYNIMLNGWFRSRKLKQGERLWEEMKKENVRPSVVTYGTLVEGYCRMRRIEKALEMVGDMTREGIEPNAIVYNPIIDALAEAGRFKEAMGMLERFHVLEIGPTNSTYNSLVKGFCKAGDLVGASKILKMMISRGFLPSPTTYNYYFRYFSRCGKIEEGMNLYTKMIESGYTPDRLTYHLLVKMLCEEGKLDLAVQVSKEMRHNGYDMDLATSTMLIHLLCKMRRLEEAFAEFEDMIRRGIVPQYLTFQRMKAELKRQGMTEMAQKLCKLMSSVPYSTNLPDTYSEDRDDAHGRRKSIIKKAKAFSDMLKDCKDPSELRNKYRSSSEKAVSNANCLIEDKGEK | 599 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g00562 | 599 | PANTHER | PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN | 89 | 595 | - | - | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 360 | 394 | IPR002885 | - | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 325 | 359 | IPR002885 | - | |
| Cca05g00562 | 599 | Pfam | PPR repeat | 224 | 242 | IPR002885 | - | |
| Cca05g00562 | 599 | Pfam | PPR repeat | 468 | 497 | IPR002885 | - | |
| Cca05g00562 | 599 | Gene3D | Tetratricopeptide repeat domain | 318 | 387 | IPR011990 | GO:0005515 | |
| Cca05g00562 | 599 | Gene3D | Tetratricopeptide repeat domain | 388 | 460 | IPR011990 | GO:0005515 | |
| Cca05g00562 | 599 | Gene3D | Tetratricopeptide repeat domain | 244 | 317 | IPR011990 | GO:0005515 | |
| Cca05g00562 | 599 | Gene3D | Tetratricopeptide repeat domain | 108 | 243 | IPR011990 | GO:0005515 | |
| Cca05g00562 | 599 | Gene3D | Tetratricopeptide repeat domain | 461 | 531 | IPR011990 | GO:0005515 | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 255 | 289 | IPR002885 | - | |
| Cca05g00562 | 599 | MobiDBLite | consensus disorder prediction | 55 | 76 | - | - | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 290 | 324 | IPR002885 | - | |
| Cca05g00562 | 599 | SUPERFAMILY | HCP-like | 255 | 461 | - | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 327 | 359 | IPR002885 | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 292 | 326 | IPR002885 | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 433 | 465 | IPR002885 | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 470 | 499 | IPR002885 | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 363 | 395 | IPR002885 | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 258 | 290 | IPR002885 | - | |
| Cca05g00562 | 599 | TIGRFAM | PPR: pentatricopeptide repeat domain | 398 | 430 | IPR002885 | - | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 430 | 464 | IPR002885 | - | |
| Cca05g00562 | 599 | Pfam | PPR repeat family | 360 | 403 | IPR002885 | - | |
| Cca05g00562 | 599 | Pfam | PPR repeat family | 254 | 303 | IPR002885 | - | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 465 | 499 | IPR002885 | - | |
| Cca05g00562 | 599 | PANTHER | LEAF PROTEIN-LIKE | 89 | 595 | - | - | |
| Cca05g00562 | 599 | Pfam | PPR repeat | 426 | 458 | IPR002885 | - | |
| Cca05g00562 | 599 | Pfam | PPR repeat | 321 | 350 | IPR002885 | - | |
| Cca05g00562 | 599 | MobiDBLite | consensus disorder prediction | 572 | 599 | - | - | |
| Cca05g00562 | 599 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 395 | 429 | IPR002885 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca05g00562 | 114 | 552 | Miscellaneous Gene Families | AT4G11690 | 25.155 | 3.81e-46 | 169 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g00562 | - | - | gmx:100793484 | 1008.82 |