Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00553 ATGGTTGAGGAAGGAAAGCCAAGGGCAGTGATTGTTGGTGGTAGCATAGCAGGAATATCAAGTGCACATGCTCTTACTTTAGCTGGTTGGAATGTCCTTGTGCTTGAGAAAACCAATGCACCTCCTTCAGGAAGTCCAACTGGTGCAGGTCTTGGACTTGACCCTCTATCTCAATCAATCATTCAGTCATGGCTTCCACAGCCACAACTCCTCAACAACATCACTGTACCACTAACTATAGATCAGAATCAGGCAACTGATAGTGAGGTCAGTAGGACATTGGCAAGAGATGAGAGTTTCAACTTCAGAGCAGCACATTGGGCTGATCTTCATGGTCTTCTTTACAATGCACTGCCATCAAATATAATTTTATGGGGCCACCTTTTTCTCTCTTTCCATGTTCAAGATGAAAAGGGTTTTGTTATAGTAAAGGCTAAAGTACTAGAAACTGGCAAGGTTGTAGAGATAGTAGGGGACTTGCTTGTTGCAGCAGATGGTTGTCTCTCTTCCATCCGCCACAAATATCTCCCTCATTTTAAACTCAGATATTCAGGCTATTGTGCTTGGAGAGGGGTCTTTGATTTTTCAGAATCTGAGACTTCAGAAACCATCAAGGGCATGAGAAAGGCCTACCCTGATTTAGGAAAATGCTTGTACTCCGACTTGGGCTCATGTACACACAATGGTttctatgagcttctaaacaaaaagctcaattggatttggtatgtgaatcaaccagagcctgAAGTTAAGGGAACCTCAGTGACCATGAAGGTAAGTAGTGACATCCAAAAGATGCATCAAGAAGCAGAAAAGGTTTGGATTCCTGAGTTGTTTAAGGTCATGAAAGAAACACATGACCCTTTCTTAAATGTCATATATGATAGTGAACCCTTGGAAAAGATATTTTGGGACAATGTGGTATTGGTAGGAGATGCAGCTCACCCTACAACTCCTCACTGCCTTAGAAGCACAAACATGTCAATATTAGATGCAGCAGTCTTAGGCAAATGCCTTGAGAAGTTTGGAGCAGAAAAAGTGAGATCAGCTTTGGAAGAATATCAGTTAATTAGGCTACCAGTAACTTCAAAGCAAGTTCTTCATGCAAGGCGTCTAGGTCGTATAAAACAAGGTTTGGTTGTCCCTGATAGAGAACCTTTTAACCCCAAATCAGCCAAGAAAGAGGACTATGAGGAACTTCTACAAAGGAACACTCCTTTTTTCAATGATGTGCCTTTGCTGCTTTCTTCAATTCTGCCCTCCACATAG 1272 0.4017 MVEEGKPRAVIVGGSIAGISSAHALTLAGWNVLVLEKTNAPPSGSPTGAGLGLDPLSQSIIQSWLPQPQLLNNITVPLTIDQNQATDSEVSRTLARDESFNFRAAHWADLHGLLYNALPSNIILWGHLFLSFHVQDEKGFVIVKAKVLETGKVVEIVGDLLVAADGCLSSIRHKYLPHFKLRYSGYCAWRGVFDFSESETSETIKGMRKAYPDLGKCLYSDLGSCTHNGFYELLNKKLNWIWYVNQPEPEVKGTSVTMKVSSDIQKMHQEAEKVWIPELFKVMKETHDPFLNVIYDSEPLEKIFWDNVVLVGDAAHPTTPHCLRSTNMSILDAAVLGKCLEKFGAEKVRSALEEYQLIRLPVTSKQVLHARRLGRIKQGLVVPDREPFNPKSAKKEDYEELLQRNTPFFNDVPLLLSSILPST 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00553 423 SUPERFAMILY FAD-linked reductases, C-terminal domain 182 296 - -
Cca05g00553 423 Gene3D - 8 385 IPR036188 -
Cca05g00553 423 SUPERFAMILY FAD/NAD(P)-binding domain 7 378 IPR036188 -
Cca05g00553 423 Pfam FAD binding domain 135 366 IPR002938 GO:0071949
Cca05g00553 423 PANTHER MONOOXYGENASE-LIKE 4 415 - -
Cca05g00553 423 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 8 30 - -
Cca05g00553 423 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 157 172 - -
Cca05g00553 423 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 305 320 - -
Cca05g00553 423 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 320 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00553 Cca-Chr5 12453009 12456682 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00553 - - gmx:100811757 681.789