Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00551 ATGAATTCATCTTCATCGAGTATGTACGTTGGTGTTCATGGTAGATCATTTGTGCCAGCTTGTTATTGTGACGATGTGGTTGTTTTGCAAACAGTGAAGACGTTTGCAAATACTGGTAAAAAGTTCTGGGGTTGTCCCAAGTACAAGGTCCCGTGGGTTCAGTTTATTGGGGTTGGCTTGATGTTGCCTAGGTTTTCTAGGCTGGTTGGCTTGGCGTTGCTTCGGTTTGCTGGGGTGGTTGGCTTGATGTTGTCTGTGTTTGGTTCAATTATTGGTCGATCATTGGGTGGGGGGTCTTCTGCTCCCAAGTCTAAATCATCTCCATTTATAAATCTAGAAGATGATGGAACCCTTGTAGCAATTGGGGATGGTGTGACTTCAATAAATGGAGATGGTGATCGTGTGAGTTCAACAACTAGCGAAGCAATAGACGATGGTGCATGTGTGGGTGCAACAAGTGGAGATGGTGATTGGGTGGGTTCAATAACTGGGGATGGTGTGGGTGTAGCAATTGAGGAAGGTGATGGTGATGGAGATGGTAAGTTTGATGGGGTTCGAGTAGATGATCCGGGGGGCGTTGCTTGCAATTTTCTCTTGAGTGAATCAGGGGATAATGTTATGATAATAAGGGGCAAAGATAAGGGTGAGACTGGCACTATTAAGCGTGTCATTCGCTCCCAGAATCGTGTCATTGTTGGTGGTAAAAATCTGGTGAAGAAGCATATCAAGCAAGGGCAAGGTCATGAAGGGGGCATCTTTTCAGTTGAAGCCCCCATTCATGCCTCCAATGTGCAGGTTATTGACCCAGTGACAGGGAAGCCTTGCAAGGTTGGAACTAAATATCTTGAAGATGGTACTAAAGTCAGAGTATCTCGAGGTATAGGAGCATCTGGGTCCATAATCCCTCGACCTGAGATCTTAAAGATAAGAACTACCCCAAGACCTACTGTCCTTGGTCCTAAAGATACTTCAATGGATATTGTGTTAGAGAAGACTTACGATGCTAAAACAGGAAGGGGCATGCCTGAGCTTTAA 1035 0.4512 MNSSSSSMYVGVHGRSFVPACYCDDVVVLQTVKTFANTGKKFWGCPKYKVPWVQFIGVGLMLPRFSRLVGLALLRFAGVVGLMLSVFGSIIGRSLGGGSSAPKSKSSPFINLEDDGTLVAIGDGVTSINGDGDRVSSTTSEAIDDGACVGATSGDGDWVGSITGDGVGVAIEEGDGDGDGKFDGVRVDDPGGVACNFLLSESGDNVMIIRGKDKGETGTIKRVIRSQNRVIVGGKNLVKKHIKQGQGHEGGIFSVEAPIHASNVQVIDPVTGKPCKVGTKYLEDGTKVRVSRGIGASGSIIPRPEILKIRTTPRPTVLGPKDTSMDIVLEKTYDAKTGRGMPEL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00551 344 Hamap 50S ribosomal protein L24 [rplX]. 198 292 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca05g00551 344 PANTHER 39S RIBOSOMAL PROTEIN L24, MITOCHONDRIAL 202 336 - -
Cca05g00551 344 Pfam Ribosomal proteins 50S L24/mitochondrial 39S L24 236 293 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca05g00551 344 Pfam KOW motif 203 232 IPR005824 -
Cca05g00551 344 SMART kow_9 199 226 IPR005824 -
Cca05g00551 344 Gene3D - 200 296 IPR014722 -
Cca05g00551 344 PANTHER MITOCHONDRIAL RIBOSOMAL PROTEIN L24 202 336 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca05g00551 344 CDD KOW_RPL26 203 266 IPR041988 GO:0003723
Cca05g00551 344 SUPERFAMILY Translation proteins SH3-like domain 202 293 IPR008991 -
Cca05g00551 344 TIGRFAM rplX_bact: ribosomal protein uL24 202 292 IPR003256 GO:0003735|GO:0005840|GO:0006412
Cca05g00551 344 ProSitePatterns Ribosomal protein L24 signature. 203 220 IPR005825 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00551 Cca-Chr5 12427113 12448222 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00551 K02895 - gmx:100305917 271.166