Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00540 ATGGAGAGGATACACGTCAGCGTCCGTGCAAGGCCTCTCTCCCCAGATGACGCAAAAACCAGCCTCTGGAGGATCTCCGGAAACTCCATTTCCATTCCCAACCACTCCAAATTCGAATTCGATCAAATTTTCAGCGATAATTGCGACACCGCGCGGGTGTACCAAGCTCGCACCAAAGATATTGTGGAGGCTGCAGTTCGCGGATTCAACGGGACTGTTTTTGCATACGGCCAAACTAATAGTGGCAAGACTTACACTATGCGAGGCTCGAAAGCGGAGCCTGGAGTTATTCCTCTCGCGGTCCACGATTTGTTTCGGATTATTCAACAAGATGTGGATCGAGAGTTTCTTCTTAGAATGTCATACATGGAGATTTATAATGAAGAAATAAATGATTTGTTGGCTCCTGAACATCGTAAACTGCAGATTCATGAAAATCTGGAGCGGGGGATATATGTTGCGGGGTTGCGAGAAGAAATTGTTGCCTCCCCTGAGCAAGTCCTTGATCTCATGGAGTATGGAGAATCTCATAGACATATTGGAGAGACAAATATGAACTTATACAGTAGCAGGTCCCATACTATTTTCCGCATGATAATTGAGAGTAGGGATAGAAGTGAAGATGAAGAAAGTGGAAGCTCTTGTGATGCTGTCCGTGTATCAGTGTTGAATTTAGTGGATCTTGCTGGTTCAGAGCGTGCTGCAAAAACTGGAGCCGAAGGTGTCCGACTCAAAGAAGGTTCTCACATAAACAAAAGCTTAATGACTTTAGGAACTGTGATTAAAAAATTGAGTGAAGGTGCTGAGAGTCAAGGGGGTCATGTTCCATATCGAGATAGCAAGCTGACTCGAATTTTGCAACCTTCTCTAGGAGGAAATGCTAAAACGGCTATAATATGTAATATCACTCTTGCTCAGATACATACAGATGAAACTAAAAGCAGCCTTCAATTTGCAAGTAGAGCATTGCGTGTCACAAATTGTGCTCAAGTGAACGAGATTTTGACAGATGCTGCTTTATTAAAGCGCCAAAAGAAAGAGATTGAAGATCTTCGTGCCAAATTGATGGGTTCTCATTCAGAGCATTTGGAAGAGGAGATTCTGAACCTTCGAAATACATTATTACAGACTGAATTGGAAAGGGAACGCATAGCTTTGGAATTAAAGGAGGAAAAGAAAGCTCAAGCTGAATGGGAAAAAAGGGTAAAAGAACAGGCCAAGAAAATCGAAAATTTGAGTTCAATGGTTTTGTTTTCAAATAGGGATGAAAGTCGTGAGCATATTAAAAAGGACAAGAGGCGGGATACATGGTGTCTAGGAAATCTTTCTAAGGAGCATCAAAGAAATGAATACTGTAACATCCAGCCTAGTGCTTCTTCTACTGTAAAGCCAATAAGACCTAAACGAGAGATGGGACCACTTCTTCCTTTTGATGAACTTGTAAATGAAGATGTTTATGTGGATGAGCCCTTTAAGCAAGAAGACAATAATAAGGATGATGCTAACAAGGATTGTAATCTACCAAACCCTTGTACTTTATTGCATGTAACAAACAGGAAAAAGGCACCATCGCAGAAGAAAAGCTTGTCCATGCAGGAGGACGACAAATTTGTAGAATTGCAGGAAGAATATGAGAGTTTGTTTCTAAAATTTGAAACTCAGAGAACTGTAAGTGAGATACAGATTGAGTCATTGAGAAAAGAGCTTATTGAGGCAACTTCTCTTCATTTTAAGGAATCTGTTGACTCTTTAAATTATGCCCACAGTGGTGGATTGAATGTTGAGAAAAATGCGAATTTTAGAGAGTCAGATGCTATTCTTGTTATCAAGAGACTTCAAGAGCAGATTAAGGTTTTGGAAATGGAAAAGTTATCAAGCCATCAAAGCTTGGATAATGTTGTTGATCTGGCAACAGAGCAGAACATATGTGCTAGGGAGAAATACAAAGAGCTCTATGAAGAGCTTATAAATGCACAGGAGGCAGCTCGGCTGGCTAATGAACAACTTACTTCCAGCAAAAGTGTGAGCAATATTAATGATGGAAATTTTGACTTTGTGATCAGTGTTTCCACGGAAATTCAAGAAATTATGTCTGAAATTCAAAGCTCAAAAGATGCTGTTCAAAGTGTTATGTTTATGGTGGATGATGCTATTAAAAACTTCTCTGCTCTACATGATACGCTCCTTGTTTTCAAAACCTCAGTTTCTCAGGATTCTGCAGAACAAAGTTTAGTCTTGAGTAATAATCAGAAGTTGAATTCTCACTTGAGAAATAAAATATTTGAGCTTGAGAGTGAGAAGATTCTTCTGGACAACCAATTAGCTGATCTTCAGAAGCATCTTCAGGAATCAAAACTAGATGCTCAGAATTCCCAAAATTCTTTGATGGAAAACTTGGAACAACAGAAATTTGAAAATGCAGAGTTGATTTCTTATATTCAAACTCTTGAAAAGGATTTATCATATTTCACATCATCTTCTGTGGCCAAGGAAAGGGAAACTTTAAGAAAAGATTTGGACAAGGCAAAAGCCAAGTTGAAAGAAATTGAGTCTAAGCTTAAGCTTGCCATACAAGAGAAAACAAAACTTGAGGGTGAGAAAGCATGTGCTGAACGAGAGACTAAACGGTTGCATGGTCAAAACTCTCTTCTTGAACGTGATATCAACAAACGTGATTTGCTTGCGGGAAGAAGACGTGATTCAATTGTTGAAAGGGGTTCAAAGATGTTTGATCCTAAAAGACCGAAGGGTCTTGCATTTTCTCTAGAACAAACATTACAGGAAGAACACAAAAAGCTGGAAGTTTTTGCATTTGAATCAGAAACAAGAATTGCTTCGTTGGAAGAAGAAATAACTGGTATATTGAAGGAGAAAGAAGAGGTGATATCTATTAATGAAGGTTTGACATCAGAATTGGAAGGCTTGACTGAGAAACTGAATACATCATCCTCTGAAGTATATAATTTGAAGGAGGAAATTTCATCTATTAAACAAAGATTGGAAGAATCTGATATCAACCAAGAAAATTTGAAAAGCTCTATCAAAGTGTTGATGGAAGAAAAGGAGGAGTTGGCCATGCAACTCACTGATTCTCTTTTGGAAATAGAGGAGGAAAGGGCAATATGGTCTGCCAAAGAGAAAGCTGCACTTCTAGCCATAGAAGAGCAAGCAAAGTCAAACAATGTACAAATTACATCATTATCAACAAAATTATTAGAAGTAAGAAATGAATTGGAGTCCTGTAGAGAAGAATGCAGGACCCTACGGGAAAAATTGACTATTACATATGAAAATGCACGTATCAAGGAAAATTCCAGCTACAGAGAAAAGGTTTCAGAGTTGGATCAACTGGAAAATCACCTCGAAACAACCAATGACAAGAGCAAACAATCCCGAGAAATGTCAAAAGCAAATTTTGAGATGCAATTCTTGGAGCATGAGCTGCATGACTGTCCTGAAGAAGAGAAAGAAAATGAAGTTCGGCAGGAACTACATGTTCTTGATAAAGGAGATAATCTATCAAACTCAAACGTGTTTCAGAATCTCAAGAACAAACTATCTGTTGTGACAAAAGAAAAGGACAAATTGAGGATTGAGATGGAAGATCAACAGAAGAAAATGGAAATTCTCCAAAAGAATTGCCAGGATGAGTTATCGAAGGAAAAGGTCCATGTTGAGGAACTGAGTCGGAAACTATCCTCTATGGAAGTCAAAAAGCATGCGGATGACGTAATGATGGCTAAGCTGAAAATGAGACTCCACGGAACACAAGCAAAGCTAGATACTATTCGATATAGATATACGGAAGCAAGCGATGAATTAGTTATAACACATAAGAAGTATAAAGACCAGTTGGCTGCAAAAGGAATAGAAGTGTTTAACCTAATGAAACAGCTTGCTGCTGTCAAAGGGCAATAG 3918 0.3874 MERIHVSVRARPLSPDDAKTSLWRISGNSISIPNHSKFEFDQIFSDNCDTARVYQARTKDIVEAAVRGFNGTVFAYGQTNSGKTYTMRGSKAEPGVIPLAVHDLFRIIQQDVDREFLLRMSYMEIYNEEINDLLAPEHRKLQIHENLERGIYVAGLREEIVASPEQVLDLMEYGESHRHIGETNMNLYSSRSHTIFRMIIESRDRSEDEESGSSCDAVRVSVLNLVDLAGSERAAKTGAEGVRLKEGSHINKSLMTLGTVIKKLSEGAESQGGHVPYRDSKLTRILQPSLGGNAKTAIICNITLAQIHTDETKSSLQFASRALRVTNCAQVNEILTDAALLKRQKKEIEDLRAKLMGSHSEHLEEEILNLRNTLLQTELERERIALELKEEKKAQAEWEKRVKEQAKKIENLSSMVLFSNRDESREHIKKDKRRDTWCLGNLSKEHQRNEYCNIQPSASSTVKPIRPKREMGPLLPFDELVNEDVYVDEPFKQEDNNKDDANKDCNLPNPCTLLHVTNRKKAPSQKKSLSMQEDDKFVELQEEYESLFLKFETQRTVSEIQIESLRKELIEATSLHFKESVDSLNYAHSGGLNVEKNANFRESDAILVIKRLQEQIKVLEMEKLSSHQSLDNVVDLATEQNICAREKYKELYEELINAQEAARLANEQLTSSKSVSNINDGNFDFVISVSTEIQEIMSEIQSSKDAVQSVMFMVDDAIKNFSALHDTLLVFKTSVSQDSAEQSLVLSNNQKLNSHLRNKIFELESEKILLDNQLADLQKHLQESKLDAQNSQNSLMENLEQQKFENAELISYIQTLEKDLSYFTSSSVAKERETLRKDLDKAKAKLKEIESKLKLAIQEKTKLEGEKACAERETKRLHGQNSLLERDINKRDLLAGRRRDSIVERGSKMFDPKRPKGLAFSLEQTLQEEHKKLEVFAFESETRIASLEEEITGILKEKEEVISINEGLTSELEGLTEKLNTSSSEVYNLKEEISSIKQRLEESDINQENLKSSIKVLMEEKEELAMQLTDSLLEIEEERAIWSAKEKAALLAIEEQAKSNNVQITSLSTKLLEVRNELESCREECRTLREKLTITYENARIKENSSYREKVSELDQLENHLETTNDKSKQSREMSKANFEMQFLEHELHDCPEEEKENEVRQELHVLDKGDNLSNSNVFQNLKNKLSVVTKEKDKLRIEMEDQQKKMEILQKNCQDELSKEKVHVEELSRKLSSMEVKKHADDVMMAKLKMRLHGTQAKLDTIRYRYTEASDELVITHKKYKDQLAAKGIEVFNLMKQLAAVKGQ 1305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00540 1305 SMART kinesin_4 1 333 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 356 IPR027417 -
Cca05g00540 1305 PANTHER KINESIN-LIKE PROTEIN KIN-7O 1 707 - -
Cca05g00540 1305 Coils Coil 331 415 - -
Cca05g00540 1305 Coils Coil 965 992 - -
Cca05g00540 1305 Coils Coil 634 668 - -
Cca05g00540 1305 Pfam Kinesin motor domain 33 323 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 Gene3D Kinesin motor domain 1 356 IPR036961 -
Cca05g00540 1305 ProSiteProfiles Kinesin motor domain profile. 3 325 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 Coils Coil 825 873 - -
Cca05g00540 1305 ProSitePatterns Kinesin motor domain signature. 221 232 IPR019821 GO:0003777|GO:0005524|GO:0007018
Cca05g00540 1305 PRINTS Kinesin heavy chain signature 68 89 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 PRINTS Kinesin heavy chain signature 222 240 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 PRINTS Kinesin heavy chain signature 275 296 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 PRINTS Kinesin heavy chain signature 183 200 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Cca05g00540 1305 Coils Coil 1064 1091 - -
Cca05g00540 1305 Coils Coil 1179 1220 - -
Cca05g00540 1305 PANTHER CENTROMERE PROTEIN E 1 707 - -
Cca05g00540 1305 Coils Coil 1007 1038 - -
Cca05g00540 1305 Coils Coil 774 794 - -
Cca05g00540 1305 Coils Coil 1107 1134 - -
Cca05g00540 1305 CDD KISc_CENP_E 4 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00540 Cca-Chr5 12203971 12231562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00540 2 434 Miscellaneous Gene Families AT5G06670 42.568 1.47e-98 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00540 K11498 - gmx:100813718 2105.49