Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00534 ATGGAGGAAGTTGAGCGGCAGCAGAAGGATGAGGACTGGTTGAAGCGGTTGAACAATAAGCTTACTGAAAGATGGGAATCCCGGAGAAGACCAACAAATATGGAGCCAGGGGTAGGGAAATGGGTATCATATCTAAAACGTGAGAAGAAGTTGGATTCACTAGTTGGTGGTCGTCCAACTGCTCCTCCAGCTCCTAAAGGAATTTACATATATGGCAATGTCGGCAGTGGGAAGACAATGCTGATGGACATGTTTTATAGTGCCACTGAAGGAATTGTCAAATATCGAAGAAGGTATCACTTTCATGAGGCCATGCTTAGAATTAATGAACATATGCACAAGATATGGAAGAACCAAACGGAAGAGAAGCCTTTGCAATCAACCATTGCTGGTTGGATCAGGAGTCTTCCTTTTGACACCAAAGCTAAGGAGTGGCTGGCTGCTGAAGAAAGATACAAGCAAGAGATACAGATGAAAAACATTCTTCCTGCTGTAGCAGATAAGTTTTTCTTGGATGGAGAAGAGAATGAAAAGGGAGCTAGCATTTTGTGCTTCGATGAGATACAGACTGTTGATGTATTTGCTATTGTGGCTTTATCTGGAATTCTAAGCAGATTGCTGAGTAGTGGAACTATAATTGTGGCTACCAGTAATCGAGCACCAAAGGACCTAAATGAGGCGGGTATGCAAAAAGAAATCTTCCAAAATCTGGTCTCTAAATTGGAAGAACATTGTGAGAAGGTATTGGTAGGGAGTGAAATTGACTATCGTCGTTTTATTGCACAAAAATCAGAAAACAAGGTGCAATATTTCTCGCCTATTGAAACAGAAGCAATCAATGAATTTGAGAAGAAGTGGCATGATGTAACAGGCAGATTAGGAGGAAGAATAATCTCCCACACCATCTCAGTGATGTTTGGAAGGACACTTGAGGTTCCTGAAAGCTGTGGTGGAGTTTCACGTTTTACATTTGACTATCTCTGCGGCCGTCCGCTGGGTGCAGCAGATTATATTGCAGTGGCTGAAAACTTTCACACTGTTTTCATATCTGATATTCCAGTAATGAGTATGCGAATCCGTGACAAGGCACGGAGATTTATCACCCTTATTGATGAGTTATACAATCATCATTGCTGCCTGTGTTGTTTGGCATCCACATCAATTGATGAATTATTTCAAGGAACTGAGGAGGGAACACTTTTTGACTTGGAAAGTTTCCAGTTTGAAACAGAGACTGAAGGTGGGAAACTTCGCCGCAATGTCTTGGCAGAAGGCAGGGTGGGCTCAGGAGGAGCCCCTTCTGGTATCACATCCATACTATCTGGTCAAGAAGAAATGTTTGCTTTTCACAGAGCTGTCTCACGCCTGATTGAAATGCAGACGCCATTATACTTGGATGGAGTCAGTAATTTCCACCCTTATTTTCAGAGACAGCATGAAAAGTTACAACAATTGTGA 1458 0.4225 MEEVERQQKDEDWLKRLNNKLTERWESRRRPTNMEPGVGKWVSYLKREKKLDSLVGGRPTAPPAPKGIYIYGNVGSGKTMLMDMFYSATEGIVKYRRRYHFHEAMLRINEHMHKIWKNQTEEKPLQSTIAGWIRSLPFDTKAKEWLAAEERYKQEIQMKNILPAVADKFFLDGEENEKGASILCFDEIQTVDVFAIVALSGILSRLLSSGTIIVATSNRAPKDLNEAGMQKEIFQNLVSKLEEHCEKVLVGSEIDYRRFIAQKSENKVQYFSPIETEAINEFEKKWHDVTGRLGGRIISHTISVMFGRTLEVPESCGGVSRFTFDYLCGRPLGAADYIAVAENFHTVFISDIPVMSMRIRDKARRFITLIDELYNHHCCLCCLASTSIDELFQGTEEGTLFDLESFQFETETEGGKLRRNVLAEGRVGSGGAPSGITSILSGQEEMFAFHRAVSRLIEMQTPLYLDGVSNFHPYFQRQHEKLQQL 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00534 485 Gene3D - 58 258 IPR027417 -
Cca05g00534 485 PANTHER ATPASE N2B 15 483 IPR005654 GO:0005524|GO:0016887
Cca05g00534 485 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 241 IPR027417 -
Cca05g00534 485 PANTHER AFG1-LIKE ATPASE FAMILY PROTEIN 15 483 - -
Cca05g00534 485 Pfam AFG1-like ATPase 51 396 IPR005654 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00534 Cca-Chr5 12064130 12071818 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00534 - - gmx:100816565 883.634
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00534 05 12064130 12071818 Cca05g00534 05 12064130 12071818 ECH