Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00533 ATGCAATTAACGAAACTATCCTCTGCAAGGTTCCAACTCCAACTCCAAGTTGAAGTCCCTTCAGGCACGACAAAACGCCGCGTTGCAGAGCAAAGCTGCTTGTCCCTCCTCACCTCATGCGAAAGTGTCGCcaccctcacccaaatccacgccctcatcctcaaactcggcctccaccgcaaccCCCTCGTCCTCACCAAGTTCGCCGCCACCTCCTCCCTCTTCGACGCCGTCCACTACGCCTCCTCCGTCATCTTCCCCGACCACGAACCCACCCCTCACACGCGCCCCTTCCACGACGTCTTCCTCTTCAACACCCTCATCAGAGCCTTCGCGCAAAccacgcactccaagccccacgccctgcgcctctacagcgccatgctccGCCACGCCGTTCCGCCCAACAAGTTCACGTTTCCGTTCGTTCTCAAGGCCTGCGCCGGCCTCGCCGGCTTGCGCCTTGGCCAGACGCTGCACTCCTCGGTTGTGAAATTTGGATTCCAAGACGACTTGCACGTGCGGAACACCATGATTCATATGTACTGTTGCTGCGGGGAAGCCACTGAGAGTGCTCAGAAGGTGTTTGATGGAAGTCCTGAACGGGATTCCGTGACGTGGAGCGCCATGATCGGAGGGTATGCACGTGCGGGGAATTCTGCACGTGCGGTTGCGTTGTTTCGAGAAATGCAGGTTACGGGGGTGTCTCCCGATGAGGTCACCATGGTTTCGGTTTTGTCTGCATGTGCTGATTTGGGTGCGCTTGAATTGGGGAAGTGGTTGGAGTCTTATGTTGAAAGGAAGAACATAACGAAGTCAGTGGAGTTGTGTAACGCGCTGATAGACATGTTTTCCAAGTGTGGTGATGTTGATAGGGCTGTGAAAGTTTTTAGGGAAATGGAATTGAGGACCATAGTTTCATGGACTTCGGTGATCGTTGGCTTGGCAACGCACGGTCGTGGATTGGAGGCTGTTTCGGTTTTTGATGAGATGGTGGAACAAGGGGTGGAGCCTGATGATGTTGCTTTCATTGGGGTGCTTTCTGCTTGTAGTCACTCAGGGCTGGTTGATAAGGGGCGTTACTATTTCAATACAATGGAGAATAGGTTCTGCATTGTGCCAAAGATCGAACATTATGGATGCATGGTTGATATGTTGAGTAGAGCAGGGCTTGTGAATGAGGCTTTGGAGTTTGTTCGAGCCATGCCGGTTGAGCCTAACCAGGTCATATGGAGAAGCATAGTCACTGCATGCCATGCTCGTGGTGAACTTAAGCTGGGTGAAAGCATATCAGAAGAGCTCATCAGGCGCGAGCCGATGCACGAGTCTAACTACGTGCTGCTGTCAAACATTTACGCGAAATTGCTGCGTTGGGAGAAGAAGACAAAGGTTAGGGAGATGATGGATGTGAAGGGGATGAGGAAGATTCCAGGTAGCACCATGATTGAGATGAATAATGAAATATATGAGTTTGTTGCTGGGGATAAGTCACATGATCGGTACAAGGAGATATATGAAATGGTGGAGGAGATGGGAAGGGAGATAAAGAGAGCAGGTTATGTGCCTACAACATCACAGGTGTTGCTTGACATTGATGAAGAAGATAAGGAAGATGCTTTGTATAGACACAGTGAAAAGCTTGCTATTGCTTTTGCTCTTCTGAGTACGCCCCCTGGAACACCTATTAGAATTGTGAAGAACCTGCGCGTTTGTGAAGATTGTCACTCTGCTACTAAGTTCATATCTAAGGTTTATAACCGGGAGATTGTTGTGAGGGACCGCAATCGTTTCCACCATTTCAAGAATGGTTTGTGCTCCTGCGGAGACTTCTGGTGA 1836 0.4717 MQLTKLSSARFQLQLQVEVPSGTTKRRVAEQSCLSLLTSCESVATLTQIHALILKLGLHRNPLVLTKFAATSSLFDAVHYASSVIFPDHEPTPHTRPFHDVFLFNTLIRAFAQTTHSKPHALRLYSAMLRHAVPPNKFTFPFVLKACAGLAGLRLGQTLHSSVVKFGFQDDLHVRNTMIHMYCCCGEATESAQKVFDGSPERDSVTWSAMIGGYARAGNSARAVALFREMQVTGVSPDEVTMVSVLSACADLGALELGKWLESYVERKNITKSVELCNALIDMFSKCGDVDRAVKVFREMELRTIVSWTSVIVGLATHGRGLEAVSVFDEMVEQGVEPDDVAFIGVLSACSHSGLVDKGRYYFNTMENRFCIVPKIEHYGCMVDMLSRAGLVNEALEFVRAMPVEPNQVIWRSIVTACHARGELKLGESISEELIRREPMHESNYVLLSNIYAKLLRWEKKTKVREMMDVKGMRKIPGSTMIEMNNEIYEFVAGDKSHDRYKEIYEMVEEMGREIKRAGYVPTTSQVLLDIDEEDKEDALYRHSEKLAIAFALLSTPPGTPIRIVKNLRVCEDCHSATKFISKVYNREIVVRDRNRFHHFKNGLCSCGDFW 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00533 611 Pfam E+ motif 488 515 IPR046849 -
Cca05g00533 611 PANTHER - 31 597 - -
Cca05g00533 611 TIGRFAM PPR: pentatricopeptide repeat domain 276 301 IPR002885 -
Cca05g00533 611 TIGRFAM PPR: pentatricopeptide repeat domain 306 339 IPR002885 -
Cca05g00533 611 TIGRFAM PPR: pentatricopeptide repeat domain 205 239 IPR002885 -
Cca05g00533 611 Gene3D Tetratricopeptide repeat domain 255 358 IPR011990 GO:0005515
Cca05g00533 611 Gene3D Tetratricopeptide repeat domain 92 152 IPR011990 GO:0005515
Cca05g00533 611 Gene3D Tetratricopeptide repeat domain 153 254 IPR011990 GO:0005515
Cca05g00533 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 100 135 IPR002885 -
Cca05g00533 611 Pfam E motif 423 483 IPR046848 -
Cca05g00533 611 Pfam PPR repeat family 304 351 IPR002885 -
Cca05g00533 611 Pfam PPR repeat family 203 250 IPR002885 -
Cca05g00533 611 Pfam PPR repeat family 100 148 IPR002885 -
Cca05g00533 611 Gene3D Tetratricopeptide repeat domain 359 548 IPR011990 GO:0005515
Cca05g00533 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 303 IPR002885 -
Cca05g00533 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 304 338 IPR002885 -
Cca05g00533 611 Pfam PPR repeat 378 402 IPR002885 -
Cca05g00533 611 Pfam PPR repeat 277 302 IPR002885 -
Cca05g00533 611 Pfam DYW family of nucleic acid deaminases 519 611 IPR032867 GO:0008270
Cca05g00533 611 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Cca05g00533 611 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 31 597 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00533 Cca-Chr5 12051533 12054540 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00533 99 611 Glycoside Hydrolase AT3G49170 39.382 4.87e-134 410
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00533 - - gmx:100778415 1058.51