Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00518 ATGCAGAATCCAACATCTGAACGCGCATGCCACGCATCCGAAAACCAAACATTGATATTAGAGAACCCACCACACTCCCACAGTCaacaaaaaccaaaaaaaataaaaaacaaaaaaccaaaaTTTACAAAATTCTCCAAAATGCTATCTCCCAACCCACTCTTTCTTCTATGCGCACTCCTTCTATGCTTACCTCTAGCCATAGTCTTcaccaccacccccaacaccaaacacaccacacaccccaccaccccaATCATCCTCAACATACCCAAAAACAACATTAACATCCCCCAAAAATTTAGCAAAAAACGCACCACCCCACTTATCCTTAACACACCCAAAAACAACCTTAGCATCCCCGAAAATCTTAACAAAAAATTATCATTGGCTCCATCGGGATCGAGGATGCCACCATCACTATTGTTGCCGTACTTGTATAAAGACTACGACGACGCGCTTTTGAAAGCCGCCACGCGCGTGAACGAAAGGCCCACTAGGCCCAACAAAACGGCGTTCATGTTCATAACCACCGTGCCACTCCCCTTCGCGCCGCTATGGGAATCTTACTTCAACCAAACCTCAAAAAATCTCTTCAACATTTATGTCCATGCGGACCCCACTTTTTCATATGACCCACCTTTCTCAGGCGTGTTCCACAACCGCGTAATTCCCTCCAAACCCACGAAACGACACACACCCACGCTCGCCGCCGCCGCGCGTCGCTTACTCGCCCACGCGCTCCTCCACGACTCGTCAAATTCGATCTTTGTGCTCCTCACACCCTCGTGCATCCCCCTCCACTCGCTCAACTTCACGCTCCACGCGCTGCACCGCCGCGGCAAGAGCTTCGTGGAGATTCTCCTCAACGAGACCACGCAGTACGATCGGTGGGCGGCGCGTGGCGCCCACGCGATGCTGCCAGAGGTGAGGTTCAAGGAGTTTCGCGTGGGGTCGCAGTTCTGGGCTCTCACGCGCCGGCACGCGCGGATGGTGGTGAGTGAGCGCGTGCTGTGGCGGAAGTTCAACGTGCCGTGCGAGCGGTGGTACGCGTGCTACCCCGAGGAGAATTACTTTCCTACCCTTTTGAACATGTGGGACCCGCGCGGGTGCGTGCACGCGACGCTCACGCATGTGAACTGGACGGGGCGCTGGGATGGGCATCCTCGCACGTACGAAGCGTGGGAAGTGGGGCCCGAGCTGATTCGGGGGATGAGGGAGGAGACGCCTAAGTACGGCGACGGCGGTGACGGAGAGAGGGATCCGTTTTTGTTTGCCAGGAAATTCGCCCCGGATGCGTTGCAACCGTTGATGAGAATTGCGAATGACGTCATCTTCAGCGCTTGA 1347 0.5152 MQNPTSERACHASENQTLILENPPHSHSQQKPKKIKNKKPKFTKFSKMLSPNPLFLLCALLLCLPLAIVFTTTPNTKHTTHPTTPIILNIPKNNINIPQKFSKKRTTPLILNTPKNNLSIPENLNKKLSLAPSGSRMPPSLLLPYLYKDYDDALLKAATRVNERPTRPNKTAFMFITTVPLPFAPLWESYFNQTSKNLFNIYVHADPTFSYDPPFSGVFHNRVIPSKPTKRHTPTLAAAARRLLAHALLHDSSNSIFVLLTPSCIPLHSLNFTLHALHRRGKSFVEILLNETTQYDRWAARGAHAMLPEVRFKEFRVGSQFWALTRRHARMVVSERVLWRKFNVPCERWYACYPEENYFPTLLNMWDPRGCVHATLTHVNWTGRWDGHPRTYEAWEVGPELIRGMREETPKYGDGGDGERDPFLFARKFAPDALQPLMRIANDVIFSA 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00518 448 Pfam Core-2/I-Branching enzyme 172 406 IPR003406 GO:0016020|GO:0016757
Cca05g00518 448 PANTHER CORE-2/I-BRANCHING ENZYME 49 447 - -
Cca05g00518 448 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00518 448 PANTHER CORE-2/I-BRANCHING BETA-1,6-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN-RELATED 49 447 IPR044174 GO:0016757
Cca05g00518 448 MobiDBLite consensus disorder prediction 1 37 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00518 Cca-Chr5 11725201 11726721 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00518 - - ccaj:109811089 810.446
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00518 05 11725201 11726721 Cca05g00518 05 11725201 11726721 ECH