Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00514 ATGGCTTTCTCCGCTTCCACCTCTTCTCCGTGTCACTCGCAGttgttttGCTCTGTTAGGTTCAATAGGAGGCATCGTAGTTGTGGTCGAGTAGGTTTCGCGTCGAACGGCGGAAGGAGATGTCGTCGTTTACGGAACGGTGTTGGTTTGAGCGTTAGCGTTAGGTCGGTGTTGAACGACAATAGGCGTAGCGTTGACGATTATGGAGCGGCGGAGTCTGCTAGGGTTTTGTTTGAGAGGCTGTTCGAGCAGACGCAGAACCGGTTTACCGGAGAGGAACCGGATCTTCGGGTTCTGGAGTCGGATCTGGAGGCGGCGCTGGTGGCGTTGAAGAAGAAGGAGGATCATTTGATGGAGGCGGAGAGGACGGTGTTGTTGGAGAATAGTAAGTTGAAGCTCACGAAGGAGGAGTTGGAGCGGCAAGAGACTGAGATTGAGGCTGCTAGGGTTAGGTATGAGAGGCTTGAGGAGGAAATGAAGGAGGCTACTGCTAGATTGGTTTCTCAGGCGAGCCGGATTGAGGAGCTGAAGCTTAGGGTTAGGGATCGGGATCACGAGATTGACGCGGTGTGGCATGCGCTGAGGTTGAAGGAGGGGGAAGTGGAGAAAATGAGGGTTGAATTGGAGGTGAAGAGTAAGGAGGCTGTGGCGTTTGAGTCTGAGCTTAGGGAGAAGGGGAGGCTTCTGGATGAAGCGAATGAGGTTTTGAAGAAACAGGAGACTGAGCTTGAGGAACTGAAGAGGGCGGTTCGAGAGAAAGAGGAAGAGATTGAGGTTTTCTTGGTTCAGAGGGAGGTTGAGAGGGAGAAGCTGAGGGTTTCCGAGGCGAATTTGGAGAAGCAGGCGATGGATTGGTTGTTGGCGCAGGAGGAGCTTAAGAGGCTGGGAGAGGATGCTGCGAGGCATGCTGAGGAGAGTAGTGAGACGCTGGATGATTTCAGGAGGGTGAAGAAGCTTCTCAATGATGTGAGGTCTGAATTGGTTTCGTCTCAGCAAGCGTTGGCGTCTTCTAGGAGCAAAATGGAAGAGCAAGAGCGGTTGTTGGAACAGCAGCTGAGTGATCTCGGGGAGCAAAGGGCAAGTGTCATGTCATACATGGAAAATTTAAAGGATGCACAGACAGAAGTGGAGAGTGAGAGAACGAAACTTAGGGTTGCTGAGGTTCGGAACAAGGAGCTTGAACGGGATCTGAAGATGGAGAAGGAGCTCATTAGTGAGTTAGAGGAGGAGCTGAAGAAAGAGAGAACTTCTTTGGAGCAGGCAATCAAAGAAATGGCTTTGCTTAAGGAAGAATTAAAGAGAAAAAGTGATGAATTCAGAGAAACGAGTGCCATTCTTCAGGTCAAAGAGTCGGAGCTTGTTGATGCCAAGCTAGAAATACAGCGTTTGAAATCTGAAAAGGCTTCCCTTCAGGGTATCTTGGAGGAGAAAGACTTGGAGCTTTCCAATGCTAGGAAGAAGCTGGAGGAAGTTAATCAGGAGATCTCTGATCTTAAGATGCTTATGAACAGTAAAGAATCCCAGCTCATTGAAGCAACCAATATGCTAAGGGAGAAAGATGAGCATGTGAAGATAATTGAGAACAAGTTGAATGATACTAACCAGAAGGCTTTCGCGGCTGAATCAGTGGTGGAAAGAATTTTAGATCTCACAAACAAACTGGTTTCTTCCATTAAGGATGAAGACATCAACTCATCAAGACCACTAAAAGATGAAATGGGTAATCAACTACTCGAGGAACTAATGGTGGAACCTACTAATGAATCTAGATGGCAACAAAAAAGACTTGAGAATGAGCTTGAGTTGGCTAAGGAAACCTTAAAAGAAAAGGAGATGGAAGTTCTTGCGGCACAGAGGGTTCTAACAATTAAAGATGAGGAGCTGAAAATGACTCTTGCAAGATTGGACGCAAAAGAGGTAGAGTTAAAAAAAGTAAGGGAAGAGGTGACAGAAGACTCTAATGATCTTAAAAGGCTGTATGCTTTGGCACAGGAGAGAATTGGTGATAAGAGCCTAGGAGATTTGGCAATTGAGAAACTTCAGCTTGAGGCAGCTCAGCTTGAAGTTGAAGCTGCCACGGATGCACTTCAAAAACTTGCCGATATGAGTCGACAACTTATGAATAAGGCTATCCAGAGTGTTGAAGCTGATAGCTACATCAGTGTCGTGCAAAGTAATGATGATAAAAACCCTGATTCGATCACAGATATCAATGACTCTGTTTGTTTCACTGAGGTAAAAGCAAGAGTTGCCCGACTCTCAGCTTTGACTGAGCAGCTTGTGATGGACGCGGGCATTGTTGCTGCAAACTAA 2313 0.4682 MAFSASTSSPCHSQLFCSVRFNRRHRSCGRVGFASNGGRRCRRLRNGVGLSVSVRSVLNDNRRSVDDYGAAESARVLFERLFEQTQNRFTGEEPDLRVLESDLEAALVALKKKEDHLMEAERTVLLENSKLKLTKEELERQETEIEAARVRYERLEEEMKEATARLVSQASRIEELKLRVRDRDHEIDAVWHALRLKEGEVEKMRVELEVKSKEAVAFESELREKGRLLDEANEVLKKQETELEELKRAVREKEEEIEVFLVQREVEREKLRVSEANLEKQAMDWLLAQEELKRLGEDAARHAEESSETLDDFRRVKKLLNDVRSELVSSQQALASSRSKMEEQERLLEQQLSDLGEQRASVMSYMENLKDAQTEVESERTKLRVAEVRNKELERDLKMEKELISELEEELKKERTSLEQAIKEMALLKEELKRKSDEFRETSAILQVKESELVDAKLEIQRLKSEKASLQGILEEKDLELSNARKKLEEVNQEISDLKMLMNSKESQLIEATNMLREKDEHVKIIENKLNDTNQKAFAAESVVERILDLTNKLVSSIKDEDINSSRPLKDEMGNQLLEELMVEPTNESRWQQKRLENELELAKETLKEKEMEVLAAQRVLTIKDEELKMTLARLDAKEVELKKVREEVTEDSNDLKRLYALAQERIGDKSLGDLAIEKLQLEAAQLEVEAATDALQKLADMSRQLMNKAIQSVEADSYISVVQSNDDKNPDSITDINDSVCFTEVKARVARLSALTEQLVMDAGIVAAN 770
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00514 770 Coils Coil 222 263 - -
Cca05g00514 770 Coils Coil 675 709 - -
Cca05g00514 770 Coils Coil 362 442 - -
Cca05g00514 770 Coils Coil 516 536 - -
Cca05g00514 770 Coils Coil 96 123 - -
Cca05g00514 770 PANTHER SYNAPTONEMAL COMPLEX PROTEIN-RELATED 42 766 - -
Cca05g00514 770 Coils Coil 593 620 - -
Cca05g00514 770 Coils Coil 126 179 - -
Cca05g00514 770 Coils Coil 334 358 - -
Cca05g00514 770 Coils Coil 628 666 - -
Cca05g00514 770 Coils Coil 446 508 - -
Cca05g00514 770 PANTHER MYOSIN HEAVY CHAIN-RELATED PROTEIN 42 766 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00514 - - gmx:100789623 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00514 05 11674319 11677623 Cca05g00514 05 11674319 11677623 ECH