Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00508 ATGAATAGCGTTTGTTCACCTTACTTTGATCCTGATTTCGATACTCTCCCAGAAAGAATATATGGTCCACCTTGCCAAGTTTGCATTGACAATGAAAGCATGGAAGGATGCACAGTGGTGAAGGTTGATAGCGTTAACAAACAGGGTCTCCTTCTAGAAGTGGTGCAAATTTTGACGGACATGAACCTTCAAATATGCAAAAGCTTTATTTCATCTGATGCTGGTTGGTTCATGGATGTGTTTCATGTCAGAGATGAAAATGGCAACAAACTAAGCGACCAGAAAGTGATTAACGACATCCAACAGGCCATAGGAAGATCAAGAGCCTCCCCACCGTCACAACAATACACCAACATCAccgctaccgctgccaccgctgccgccgccgccgccaccAACTCGGTGATGCCAACAATCGCCAACTACAAGAGCCACTCCAAGAAGCTCTTCCCCTTGATCCCCCACCCCAACGACCAACACACCGCCATAGAGATGACCGGCGCCGACCGCCCCGGCCTCTTCTCGGAGATCTCCGCCGCCCTCGCCGACCTCCACTGCAACATCGTGGAGGCCCACGCGTGGAGCCACAACGCCAGGCTCGCATGCGTGGCTTATATCTCCGACCACGGAGGCGGCGCCGCCAGCCACCCCGACGTCAAGACCTCGGAGCTTCTCGCCGGCGAGGGCACCATGACCACCGTGGAGCGAAGGCTGCACCAGCTTATGCTCTCCGTTAGGGACTTCGAGACTCCCTCGTCGCCCAAGGAGATGAATAAGGGGAGGAAAAGGATGGTCACGATTGAAAGCTGCGACCAAAAGGGGTATTCCATTGTCAGCATCGAGTGCAAGGACCGTCCCAGGCTCATGTTTGACACTGTTTGCACGTTGACGGACATGCAGTACGTAATTTTCCACGCTTCCATCAGTTCCCATGCAGGTTATGCATTTCAGGAGTATTTTATCAGACACGTAGACGGATATGCTTTAGATACAGCATGCGAGAAGGAACGAGTAATGAAATGTTTAGAGGCAGCTATAGAACGCCGGGTTTGTGAGGGAGTTAGGTTAGAGTTGTGTGCAGACAATAGAGTTGGATTGCTCTCTGACATAACCCGAGTACTCAGAGAGAACGGCCTCGTGGTTGTTCGAGCAGATGTTGAAACGCGTGGAGAGAAATCTGTGAATGCTTTCTATGTGAGGGACATATCAGGGAACGAGGTTGACATTGAATACTTCAGCAAAACAGTGAAGAGGGAAATGGGTCCAATCGTCACGCTCCGTGTCAAGAATAATGACACTAGCAGAAGAAAGCCTACTACAGCTACAGCCTCACCTAAACAGTCATCCCCTCTCTCATTCGGAGGCATGCTAAGATCTAGGATTGAACGTCTTTCTCATGGCTTCATTCTATGA 1413 0.4862 MNSVCSPYFDPDFDTLPERIYGPPCQVCIDNESMEGCTVVKVDSVNKQGLLLEVVQILTDMNLQICKSFISSDAGWFMDVFHVRDENGNKLSDQKVINDIQQAIGRSRASPPSQQYTNITATAATAAAAAATNSVMPTIANYKSHSKKLFPLIPHPNDQHTAIEMTGADRPGLFSEISAALADLHCNIVEAHAWSHNARLACVAYISDHGGGAASHPDVKTSELLAGEGTMTTVERRLHQLMLSVRDFETPSSPKEMNKGRKRMVTIESCDQKGYSIVSIECKDRPRLMFDTVCTLTDMQYVIFHASISSHAGYAFQEYFIRHVDGYALDTACEKERVMKCLEAAIERRVCEGVRLELCADNRVGLLSDITRVLRENGLVVVRADVETRGEKSVNAFYVRDISGNEVDIEYFSKTVKREMGPIVTLRVKNNDTSRRKPTTATASPKQSSPLSFGGMLRSRIERLSHGFIL 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00508 470 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 2 209 IPR040217 -
Cca05g00508 470 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR4-RELATED 214 469 IPR040217 -
Cca05g00508 470 Gene3D - 157 246 - -
Cca05g00508 470 CDD ACT_ACR_1 37 108 - -
Cca05g00508 470 ProSiteProfiles ACT domain profile. 162 239 IPR002912 -
Cca05g00508 470 SUPERFAMILY ACT-like 157 211 IPR045865 -
Cca05g00508 470 Pfam ACT domain 162 198 IPR002912 -
Cca05g00508 470 Pfam ACT domain 355 401 IPR002912 -
Cca05g00508 470 SUPERFAMILY ACT-like 34 103 IPR045865 -
Cca05g00508 470 MobiDBLite consensus disorder prediction 435 453 - -
Cca05g00508 470 ProSiteProfiles ACT domain profile. 355 431 IPR002912 -
Cca05g00508 470 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 2 209 - -
Cca05g00508 470 PANTHER ACT DOMAIN-CONTAINING PROTEIN ACR2 214 469 - -
Cca05g00508 470 CDD ACT_ACR_3 275 349 - -
Cca05g00508 470 ProSiteProfiles ACT domain profile. 39 114 IPR002912 -
Cca05g00508 470 MobiDBLite consensus disorder prediction 430 453 - -
Cca05g00508 470 SUPERFAMILY ACT-like 353 415 IPR045865 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00508 Cca-Chr5 11396822 11400972 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00508 - - gmx:100820595 786.949
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00508 05 11396822 11400972 Cca05g00508 05 11396822 11400972 ECH