Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00505 ATGTCTTCTCCGAACCTCCACAGAGAAATTCACTACTTGGTCTTACAGTACTTGAATGAGCATGGTTTCGAAGAATCAGCATACACTCTTGGGCGTGAAACTGGGTTATACTTTTCCTTAAACCATTTTGAGAAGATGGTGCTTGAGGGCAAGTGGGATGAGGCTGAGAACTACCTTTCAGGGTTCGCGTTGGTCAAGGAAATATTATTTGAAATGAAGAAGCAGAAATACTTGGAAGCATTGGACAATAACGAACGTGACAAGGCCATGGATATCCTCATAAAGGAGATTAAAGTCTACATACAAGGAAATGAAAAGTTGATGAAAGACCTTAGTTACCTTCTGATGGTTGATGATATAAGGCAAATTATACCATCATATACAGATGTAAATTCTATAAGGATGAAGCTGATGGCTTTTATTAAAAGAGTTATACTTGGGCATCCTCTATTGAGTGGAAAGCTAAATCTTCCATTTATTGAAAGTAACAGGTTACTCAGTCATATCGTTAAAAGCTCCATGTGGGAGTGGCATGAGCAGAATCTAAATCCTGGTAAAAGAAACCAGAACATTTAA 576 0.3802 MSSPNLHREIHYLVLQYLNEHGFEESAYTLGRETGLYFSLNHFEKMVLEGKWDEAENYLSGFALVKEILFEMKKQKYLEALDNNERDKAMDILIKEIKVYIQGNEKLMKDLSYLLMVDDIRQIIPSYTDVNSIRMKLMAFIKRVILGHPLLSGKLNLPFIESNRLLSHIVKSSMWEWHEQNLNPGKRNQNI 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00505 191 PANTHER TOPLESS-LIKE PROTEIN 5 185 - -
Cca05g00505 191 Gene3D - 6 55 - -
Cca05g00505 191 PANTHER TOPLESS-RELATED PROTEIN 1-RELATED 5 185 IPR027728 GO:0006355
Cca05g00505 191 Pfam LisH 12 34 IPR006594 GO:0005515
Cca05g00505 191 SMART Lish 6 38 IPR006594 GO:0005515
Cca05g00505 191 ProSiteProfiles C-terminal to LisH (CTLH) motif profile. 37 88 IPR006595 -
Cca05g00505 191 SMART ctlh 36 88 IPR006595 -
Cca05g00505 191 ProSiteProfiles LIS1 homology (LisH) motif profile. 6 38 IPR006594 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00505 Cca-Chr5 11354685 11356111 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00505 - - ccaj:109788348 322.783