Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00490 ATGGAGCCGGAAGTGAGCATCGAGGGATCGGCGATGATCCAGGTGGCGGTGGTTCCGATCGGACCAGTGCCGTCGAACCTGCTGCGGGACTACTACTCCATGCTGCTCCCGCTGCACACGATCCCGCTCTCCGCTATCAGCTCCTTCTACACGGAGCACCAGAAGTCTCCGTTCGCGGTCCAGCCCTGGGACACTGGTTCCCTCCGCTTCAAGTTCGTCCTCGGCGGCGCTCCGCCCAGCCCCTGGGAGGACTTCCAGTCGCACCGCAAAACCCTCGCCGTCGTCGGCGTCGTCCACTGCCCTTCCTCGCCAGATCTCGACGCCGCCGTCGACTACTTCTCCATTGCCTGCAAGTCCTTCCCCTCTTCCCTCGTCGATCGCTGCTTCGCCTTCTGCCCTGACGATTCGCAGCTTGAGGATGGAAGTAGGAAAGGGGGGAATTTGAGGTTGTTTCCTCCTGCAGATCGGCCAACGTTGGAGTTCCACTTGAACACTATGATGCAAGAGATTGCTGCTTCGTTGCTTATGGAGTTTGAGAAATGGGTGCTTCAGGCGGAATCTTCCGGAACCATTCTTAAGACGCCCTTAGATTCTCAAGCTAGTCTCAGCTCAGAGGAGGTTATCAAGGCCAAAAAGAGAAGGCTTGGGCGTGCTCAGAAGACCATTGGTGATTACTGTTTGCTGGCAGGGTCCCCAGTAGATGCCAATGCTCATTATTCTACTGCATTGGAACTTTCCAGGTTAACTGGTGATTTCTTCTGGTATGCTGGAGCATTGGAAGGCAGTGTTTGTGCCTTGCTGATTGACCGTATGGGCCAGACAGATTCAATCCTGGAAGACGAAGTTAGGTATCGTTATAATAGTGTCATCTTGCATTACAAGAAGTCCCAAGATAATGCTCAGCGGGTTTCTCCCCTAACTTTTGAACTTGAAGCTACTTTAAAATTAGCAAGGTTTCTTTGCAGGAGAGAGCTGGCCAAGGAGGTGGTGGAGTTGTTGACCACTGCTACAGATGGTGCTAAATCTTTAATTGATGCAAGTGATAGGCTCATATTATATATTGAAATAGCTCGTCTGTATGGAAGTCTTGGATACCAGAGAAAAGCAGCATTCTTCTCCAGGCAGGTTGCACAGTTGTATCTGCAGCAAGAAAATAGACTGGCTGCAATTAGTGCTATGCAAGTTTTGGCAATGACAACAAAAGCTTATCATGTTCAAAGTAGATCATCAATCTCCAATCATTCTTTGCACAATAAGGGAATTGTATCAAATAATGCTGATAGTGGAAAAACATATCATCAATCAGCAGTCTCACTATTTGAGTCTCAATGGAGTACCCTCCAGATGGTTGTATTGAGAGAAATTCTGCTCTCAGCCGTCCGTGCTGGTGACCCTCTTACTGCATGGAGTGCAGCAGCTCGACTTCTTAGATCCTACTATCCTCTGATAACACCTGCTGGGCAAAATGGCCTTGCTAATGCACTTTCTAATTCAGCTGAGAGGCTGCCACCAGGGACTCGGTGTGCTGATCCTGCTTTACCCTTTGTGAGGCTGCATTCCTTTCCTCTCCACCCATCACAAATGGACATAGTAAAACGTAGTCCAGCTAGAGAAGACTGGTGGGCTGGTGCTGCTCCTTCAGGTCCTTTCATTTATACACCATTCAATAAAGGAGAGACTAGTAATGTCAAGAAGCAAGAGCTTATTTGGATTGTTGGAGAGCCTGTAGAAGTTGTGGTGGAATTGGCAAACCCATGTGGCTTTGATTTAAGGGTCGATAGCATTTATCTATCTGTGCATTCTGGAAATTTTGATGCTTTCCCCATGAGTGTAAGCCTTCTACCAAATTCTTCAAAAGTGATCACCTTGTCTGGCATTCCAACATCAGTGGGGCCAGTTACAATTCCTGGGTGCATTGTTCATTGTTTTGGTGTTATTACTGAACATCTGTTTAAAGAGGTTGACAATCTGCTTCTTGGGGCTTCACAAGGGCTGGTCCTTTCTGACCCTTTTCGATGCTGTGGATCTCCCAAGTTGAAAAATGTATCTGTTCCTAATATTTCTGTAGTACAACCACTTCCATTGTTGGTATCACATGTTGTTGGAGGTGATGGTGCCATCATTTTGTATGAAGGCGAAATTCGTGATGTGTGGATACGCCTGGCTAATGCAGGTACTGTTCCAATTGAGCAGGCCCATATTTCACTGTCAGGGAAAAATCAAGATTCTGTAATTTCATATTCTTCTGAGACTTTAAAATCTTGCCTCCCTCTAAGGCCTGGAGCTGAAGTTACATTCCCTGTGACCTTGAGAGCCTGGCAAGTTGGCTTGGGGGATGCTGATGCTGGTGCAGGAAAGACTCTCTCTGGGAACAATATGAGGCATTCCAAAGATGGAAGCAGCCCGTCACTGTTGATCCACTATGCTGGTCCAATGATAACCTCTGAAGATACTTCAACAAATGGATCTACTGTGCCCCCTGGTAGACGCCTTGTTGTTCCCCTTCAGATTTGTGTTTTGCAGGGTTTGTCTTTTGTGAAGGCTCAGCTTCTTTCAATGGAGTTTCCTGCGCATGTTGGTGAAAATCTTCCGAAGTTGGATGATGTAAATAACAAGTCTAATGGAGGACATCATGACTCCGAGACAAATATGGACAGATTGGTGAAAATAGATCCTTTCAGAGGAAGTTGGGGACTGCGATTTCTTGAACTTGAGTTATCTAATCCAACAGATGTTGTGTTTGAAATCAATGTCTCTGTCAAACTGGACAACTCTAGCAATGAGGACAATCATTTTCCTGATCAGGATACTACAGAATATGTCTATCCTAAAACAAGAATTGATAGAGAATGCTCAGCGAGGGTTCTAGTGCCTCTTGAGCATTTTAAATTACCCGTTCTTGACGATTCCTTTTTTATGAAGGACACCCATGCAGATGGGAATGGTGGAGTGAAAAATGCGTCCTTCTCTGAAAAGAACACCAAAGCTGAACTCAATGCTTGTATCAAGAACCTTATATCTAGGATCAAGGTTCAATGGCATTCAGGTCGCAATAGCTCTGGAGAGTTAAATATCAAGGAAGCTATTCAGGCAGCACTCCAAACGTCAGTCATGGATGTTTTATTGCCGGATCCATTGACGTTTGGCTTCACGCTAGTTAGAAATGGTTCTGAATCAGGAAAACCTTGTACTGATAAAGAATCTGATTCAGTTGAATCTCGTGCTTCCAAAGGTTCAGTGCTTGCACATGAAATGACACCAATGGAAGTTCTGGTTCGTAATAACACCAAGGATATGATCAAAATGAGTCTTAATATTACATGCAGAGATGTAGCTGGGGAAAATTGTGTAGATGGTACCAAATCAACTGTTCTATGGACTGGTGTTCTGAGTGATATAACTACTGAAATTCCCCCACTTCAACAAATTAGACTCTCTTTCTGCCTACATTTTCTTGTACCCGGAGAGTATACGTTACTTGCTGCTGCAGTGATTGATGATGCAACTGACATTCTTCGTGCCCGTGCCAAGACCACTTCGGCTTCTGAGCCGATTTTCTGTCGTGGACCACCATATCATGTACGTGTCCTTGGGTCTGCATGA 3603 0.4577 MEPEVSIEGSAMIQVAVVPIGPVPSNLLRDYYSMLLPLHTIPLSAISSFYTEHQKSPFAVQPWDTGSLRFKFVLGGAPPSPWEDFQSHRKTLAVVGVVHCPSSPDLDAAVDYFSIACKSFPSSLVDRCFAFCPDDSQLEDGSRKGGNLRLFPPADRPTLEFHLNTMMQEIAASLLMEFEKWVLQAESSGTILKTPLDSQASLSSEEVIKAKKRRLGRAQKTIGDYCLLAGSPVDANAHYSTALELSRLTGDFFWYAGALEGSVCALLIDRMGQTDSILEDEVRYRYNSVILHYKKSQDNAQRVSPLTFELEATLKLARFLCRRELAKEVVELLTTATDGAKSLIDASDRLILYIEIARLYGSLGYQRKAAFFSRQVAQLYLQQENRLAAISAMQVLAMTTKAYHVQSRSSISNHSLHNKGIVSNNADSGKTYHQSAVSLFESQWSTLQMVVLREILLSAVRAGDPLTAWSAAARLLRSYYPLITPAGQNGLANALSNSAERLPPGTRCADPALPFVRLHSFPLHPSQMDIVKRSPAREDWWAGAAPSGPFIYTPFNKGETSNVKKQELIWIVGEPVEVVVELANPCGFDLRVDSIYLSVHSGNFDAFPMSVSLLPNSSKVITLSGIPTSVGPVTIPGCIVHCFGVITEHLFKEVDNLLLGASQGLVLSDPFRCCGSPKLKNVSVPNISVVQPLPLLVSHVVGGDGAIILYEGEIRDVWIRLANAGTVPIEQAHISLSGKNQDSVISYSSETLKSCLPLRPGAEVTFPVTLRAWQVGLGDADAGAGKTLSGNNMRHSKDGSSPSLLIHYAGPMITSEDTSTNGSTVPPGRRLVVPLQICVLQGLSFVKAQLLSMEFPAHVGENLPKLDDVNNKSNGGHHDSETNMDRLVKIDPFRGSWGLRFLELELSNPTDVVFEINVSVKLDNSSNEDNHFPDQDTTEYVYPKTRIDRECSARVLVPLEHFKLPVLDDSFFMKDTHADGNGGVKNASFSEKNTKAELNACIKNLISRIKVQWHSGRNSSGELNIKEAIQAALQTSVMDVLLPDPLTFGFTLVRNGSESGKPCTDKESDSVESRASKGSVLAHEMTPMEVLVRNNTKDMIKMSLNITCRDVAGENCVDGTKSTVLWTGVLSDITTEIPPLQQIRLSFCLHFLVPGEYTLLAAAVIDDATDILRARAKTTSASEPIFCRGPPYHVRVLGSA 1200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00490 1200 PANTHER TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 9 1 1198 IPR013935 -
Cca05g00490 1200 MobiDBLite consensus disorder prediction 1057 1078 - -
Cca05g00490 1200 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 327 742 IPR013935 -
Cca05g00490 1200 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 201 273 IPR013935 -
Cca05g00490 1200 Pfam Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit 9 196 IPR013935 -
Cca05g00490 1200 PANTHER TRAPP II COMPLEX, TRS120-RELATED 1 1198 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00490 K20306 - gmx:100784850 2244.93