Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00486 ATGACTGTTGCGGTTAATGTTTCTCAGTTTGAAGGCATTCCTATGGCTCCTCCTGATCCAATTCTTGGAGTTTCCGAGGCATTTAAAGCCGACACAAGTGATGTCAAGCTCAATCTTGGAGTTGGGGCATACAGAACGGAAGAACTACAGCCATATGTGCTTAATGTTGTTAAAAAGGCAGAGAATCTTATGCTGGAGAGAGGGGATAACAAAGAGTATCTCCCTATTGAGGGTTTGGCTGCCTTTAATAAGGCAACTGCAGAGTTGTTACTCGGAGCAGACAACCCAGCAATCAAACAGCAAAGAGTTGCCACTGTCCAAGGTCTTTCTGGAACTGGATCTCTGCGACTAGGTGCAGCTCTGATAGAACGATATTTTCCTGGGGCAAAAGTTTTGATATCAGCTCCTACCTGGGGTAACCACAAGAATATTTTCAATGATGCTAGAGTCCCATGGTCTGAGTACCGATATTACGATCCCAAGACAGTTGGCTTGGATTTTGAGGGCATGATTGAAGATATAAAGTCAGCTCCAGAAGGATCTTTTGTGGTACTTCATGGATGTGCTCATAACCCTACTGGTATTGATCCAACACCTGAACAGTGGGAAAAAATAGCTGATGTAATTCAAGAAAAGAACCACATTCCCTTTTTTGATGTTGCTTACCAGGGGTTTGCTAGTGGAAGCCTTGATGAAGATGCAGCTTCTGTGAGACTGTTTGTGGCATGTGGCATGGAGGTTCTAGTGGCTCAGTCATACAGCAAAAACCTTGGTCTCTATGCTGAAAGGATTGGAGCAATCAATGTGATTTCATCATCGCCAGAATCTGCAGCAAGGGTAAAGAGCCAGTTGAAAAGGCTTGCACGACCAATGTACTCTAATCCACCTGTACATGGAGCTAGGATTGTTGCTGATGTTGTTGGGAACCCTGCTCTCTTTAATGAATGGAAAGCAGAGATGGAAATGATGGCCGGAAGGATAAAGAATGTCAGGCAGCAGCTATATGATAGCATTACTTCAAAAGACAAGAGTGGAAAAGATTGGTCATTCATACTTAGGCAGATAGGCATGTTCTCATTCACCGGCTTGAACAAGAACCAGAGTGACAACATGACAAATAAGTGGCATGTATACATGACAAAGGATGGAAGGATTTCCTTGGCAGGATTGTCGTTGGCCAAATGTGAATACCTTGCGGATGCTATTATTGATTCATACCATAATGTCAGCTGA 1233 0.4347 MTVAVNVSQFEGIPMAPPDPILGVSEAFKADTSDVKLNLGVGAYRTEELQPYVLNVVKKAENLMLERGDNKEYLPIEGLAAFNKATAELLLGADNPAIKQQRVATVQGLSGTGSLRLGAALIERYFPGAKVLISAPTWGNHKNIFNDARVPWSEYRYYDPKTVGLDFEGMIEDIKSAPEGSFVVLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDEDAASVRLFVACGMEVLVAQSYSKNLGLYAERIGAINVISSSPESAARVKSQLKRLARPMYSNPPVHGARIVADVVGNPALFNEWKAEMEMMAGRIKNVRQQLYDSITSKDKSGKDWSFILRQIGMFSFTGLNKNQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00486 410 Gene3D - 68 309 IPR015421 GO:0003824
Cca05g00486 410 CDD AAT_like 37 402 - -
Cca05g00486 410 ProSitePatterns Aminotransferases class-I pyridoxal-phosphate attachment site. 252 265 IPR004838 GO:0003824|GO:0009058|GO:0030170
Cca05g00486 410 Pfam Aminotransferase class I and II 36 402 IPR004839 GO:0009058|GO:0030170
Cca05g00486 410 PANTHER ASPARTATE AMINOTRANSFERASE, CYTOPLASMIC 1 408 - -
Cca05g00486 410 Gene3D Aspartate Aminotransferase, domain 1 13 402 IPR015422 GO:0003824
Cca05g00486 410 PRINTS Aspartate aminotransferase signature 282 307 IPR000796 GO:0006520|GO:0008483
Cca05g00486 410 PRINTS Aspartate aminotransferase signature 183 202 IPR000796 GO:0006520|GO:0008483
Cca05g00486 410 PRINTS Aspartate aminotransferase signature 214 226 IPR000796 GO:0006520|GO:0008483
Cca05g00486 410 PRINTS Aspartate aminotransferase signature 351 369 IPR000796 GO:0006520|GO:0008483
Cca05g00486 410 SUPERFAMILY PLP-dependent transferases 8 404 IPR015424 -
Cca05g00486 410 PANTHER ASPARTATE AMINOTRANSFERASE 1 408 IPR000796 GO:0006520|GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00486 Cca-Chr5 10791605 10796227 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00486 K00811 - gmx:547792 800.816