Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00479 ATGGATTCCTCGGTTCATCAACGGGCTCCGCTACCGTTACCCTGGAAATATGCACCAAACACAGCAAGTGTTAGAGCTGCGTATTGGCCTGCGGGTGATGACCTTTCACCCTCTTCCATCGACACAAAATACTTCACTCACATCTACTACGCCTTCATCCAACAACACCCACAATTCTTCTACCTTAATGTCACCGAATTCCACAAAAAATGGATTCCTCGGTTCATCAACGGGCTCCGCTACCGTCCCCCGCCTGTGAAAACGCTCTTGTCTATTGGCGGAGGTGGCAGCAACTCCACCGCTTTCTCCCTCATGGCTACCGACAAACGCACCCGCCAAGTTTTCATTAACTCCACCATCCACGTGGCGCGCCGTTACGGGTTCAACGGTCTTGATTTGGATTGGGAGTTCCCGGATAATGAAGCTGACATGTCCAACCTTGGTGCCTTGTTTCAAGAGTGGCACCAAGCCTTGGTGGTGGAAGCTAAAGTCAGTAAAAAACCGCGACTGTTTTTAACAGCCGCGGTTTATTATGCTTCTACCATCAAACTTATTGGTAATGGGCCGAGATCGTATCCGGCCCAAGCCATTAAGGACTACTTAGATTGGGCTAGTCCAATGTGTTTTGACTACAATGGGGCATGGGCTAATTTCACGGGCTTCAATGCTGCATTGGATGATCCAAAGTCCAATGTAAGTACCCGTTATGGGATCGGGTCTTGGATCGGGTCGGGTGTGCCGGCCGGAAAGTTGGTTATGGGTTTACCGTTATACGGCCGGACATGGGCACTGAAAGACCCGAATGTTCATGGGGTTGGAGCAGAAGCGGTTGGGGCTGCCACTGATACTGATGGCACCTTGGACTATGATGAAATTTTGGTGTTTAACAAAGAGAATGGTGCCACTATTGTGTATGATGATGTAGCTGTGTCTTTCTACTCTTATGCGGGTACTACTTGGATCGGGTATGATGATGGACCATCCATAACAAAGAAGGTTCAGTTTGCTAAGTCATTGGGCTTGAAGGGCTATTTCTTTTGGGCTGTTGGGAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCGAATGCATGGGGACATTGA 1104 0.4882 MDSSVHQRAPLPLPWKYAPNTASVRAAYWPAGDDLSPSSIDTKYFTHIYYAFIQQHPQFFYLNVTEFHKKWIPRFINGLRYRPPPVKTLLSIGGGGSNSTAFSLMATDKRTRQVFINSTIHVARRYGFNGLDLDWEFPDNEADMSNLGALFQEWHQALVVEAKVSKKPRLFLTAAVYYASTIKLIGNGPRSYPAQAIKDYLDWASPMCFDYNGAWANFTGFNAALDDPKSNVSTRYGIGSWIGSGVPAGKLVMGLPLYGRTWALKDPNVHGVGAEAVGAATDTDGTLDYDEILVFNKENGATIVYDDVAVSFYSYAGTTWIGYDDGPSITKKVQFAKSLGLKGYFFWAVGKDKDWTISRQASNAWGH 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00479 367 SUPERFAMILY Chitinase insertion domain 258 323 IPR029070 -
Cca05g00479 367 Gene3D Glycosidases 38 353 - -
Cca05g00479 367 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 23 367 IPR001223 GO:0005975
Cca05g00479 367 PANTHER CLASS V CHITINASE CHIT5A 15 366 - -
Cca05g00479 367 CDD GH18_plant_chitinase_class_V 21 358 - -
Cca05g00479 367 Pfam Glycosyl hydrolases family 18 27 352 IPR001223 GO:0005975
Cca05g00479 367 Gene3D - 257 323 IPR029070 -
Cca05g00479 367 SUPERFAMILY (Trans)glycosidases 25 364 IPR017853 -
Cca05g00479 367 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 128 136 IPR001579 GO:0004553|GO:0005975
Cca05g00479 367 PANTHER CHITINASE 15 366 - -
Cca05g00479 367 SMART 2g34 23 352 IPR011583 GO:0008061
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00479 Cca-Chr5 10547872 10549704 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00479 24 365 Glycoside Hydrolase AT4G19810 44.186 1.25e-93 283
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00479 K01183 - gmx:100787511 638.647