Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00472 ATGGCCGATTCAAGCACACAGATTCTTAGCATAGTTATCTTCCTTGCCCTCGTTTCTCAAGGTTATAGTCAATGTTCCTTGCATGATCTCTCCGTAGAACAAAGTCAAACAGGAGCCAAAGTTCATGGGAAAACAGAATGGAGTGTGACTATCACCAACAAGTGTCCATGTGTTCAAACGAATGTGATTTTGAATTGCATTGGATTTAAATCTGCTGAAAGAATAGACCCTTCACTTTTGCGTGTCACACCTAAGGGTTGTCTTGTTAATGATGGTCAATCTATCTATTCAGATGCTATCAAATTCAAATATTCTTGGGATAACTCGTTCCCATTGAATCCTATTTACTCAGAGATTGCATGTTCTTAG 369 0.3875 MADSSTQILSIVIFLALVSQGYSQCSLHDLSVEQSQTGAKVHGKTEWSVTITNKCPCVQTNVILNCIGFKSAERIDPSLLRVTPKGCLVNDGQSIYSDAIKFKYSWDNSFPLNPIYSEIACS 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00472 122 PANTHER PROTEIN TAPETUM DETERMINANT 1-LIKE-RELATED 1 122 IPR040361 -
Cca05g00472 122 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE FAMILY PROTEIN 1 122 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00472 Cca-Chr5 10295719 10296235 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00472 1 121 Glycosyltransferase AT4G32110 47.154 3.78e-30 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00472 - - ccaj:109812006 142.124