Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00469 ATGTTTCTAAGAAACCCTTCCTACACAAACCCAGAATCCTGCCAGCACCTTGCTGAGTACAAACTCAAGCATGGTTTCAATGGTTACAAAGTCATTCAAAAGTTCCTAGTGACCTCTCCAATTGGGAAAACCAGTGTGAAGAAACCCAACACAAAGGTACCCAGATGCAGTTTCTGTAATGGGTGTGAAGGGAGGCTCTATTTATGCCTGATTTGTTCTTCATTCTCGTGTTTGGATCATACCCTTTTGCATCCTCAATCAGAAACTGGTCATGCTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCCGTGATCAATTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAATGGGGGTGGCAGGTGGTGCCACTGGGAATGAAAGCATTGGCCAGAGGTTGATCAAGAGGAGGAGATTGGTTTCTGGGGTTGGATTGGATTTGCAAAAATCTAAGTGTAGAGTTTCCACCAAAGATCTGAGAGCTAAATCGTGTTATCCTATGGGGTTGAGAGGATTGAACAATCTCGGTAGCACGTGTTTCATGAATTCTGTGCTGCAAGCATTGTTACATGCACCTCCTTTCAGGGACTATTTCCTGAGTGGTGGACACCGTTTGGAAACTTGTCATCAGAGAAGAATCTCGGATCTGATGTGTTTGCTCTGTGATGTTAACGCTATTTTTTCAGCTGTGTATTCGGGGGATCGAAATCCGTATAGTCCTGCTCAGTTTCTCTACAGCTGGTGGCAGCATTCAGCGAATTTAGCAAGTTATGAGCAGCAGGATGCTCACGAGTTTTTCATTTCAATGTTAGATGCAATCCATGAGAAAGAGGGCAAAACAAGGAATGGAAGCAAAGGCAATGGAGACTGTCAATGCATTGCTCATAGGGTGTTCTATGGGTTATTGAGATCAGATGTTACCTGTATGGCATGTGGATTCACCTCAACAACCTATGACCCTTGTGTGGACATTTCCCTTAACTTGGACACTCATGTGTCTTCAACAGAAAAGGGTAAAAAGTTTACCAAACAGAATGAGGATGGCGGAATGTCTACACTTTCGGGTTGTTTAGATTTGTTCACTAGGCCAGAGAAGTTGGGGTCAGACCAGAAACTGTACTGCCAGAATTGTCAGGAAAGGCAGGACTCATTGAAGCAAATGTCCATTAGAAAGCTTCCTTTAGTACTTAGTTTGCACGTAAAACGATTTGAGCACTCGTTTGTTAAGAAGTGTTCTAGAAAAATAGACCGCTACCTACACTTCCCATTTTCCTTAGACATGGCTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGGAACAGGATTTATACTTTTGGGGGTGATGAATCAGATATGTTTTCTGAGTTTGAGATTTTTGCTGTGGTGACACATTCGGGGACGCTTGAGTCTGGTCATTATGTTTCTTTCGTGCGTTTAAGGAATCAATGGTACAGATGTGATGATGCTTGGATAACCGAGGTTGACGAGGCAACAGTCAGAGCTTCACAGTGTTACATGATTTTCTATGTGCAAAAAACTATGCAGGATAAAGCGTATGAAGACCTTAATCATGTGCCAAATTCCCCTGGAAGAGAACTATTTCATCCTATTTCTGGATGTTGCTAG 1659 0.4292 MFLRNPSYTNPESCQHLAEYKLKHGFNGYKVIQKFLVTSPIGKTSVKKPNTKVPRCSFCNGCEGRLYLCLICSSFSCLDHTLLHPQSETGHAVFVDIERAELYCGVCRDQLYDPDFDQVVMSKHSMGVAGGATGNESIGQRLIKRRRLVSGVGLDLQKSKCRVSTKDLRAKSCYPMGLRGLNNLGSTCFMNSVLQALLHAPPFRDYFLSGGHRLETCHQRRISDLMCLLCDVNAIFSAVYSGDRNPYSPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKTRNGSKGNGDCQCIAHRVFYGLLRSDVTCMACGFTSTTYDPCVDISLNLDTHVSSTEKGKKFTKQNEDGGMSTLSGCLDLFTRPEKLGSDQKLYCQNCQERQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKCSRKIDRYLHFPFSLDMAPYLSSSILRARYGNRIYTFGGDESDMFSEFEIFAVVTHSGTLESGHYVSFVRLRNQWYRCDDAWITEVDEATVRASQCYMIFYVQKTMQDKAYEDLNHVPNSPGRELFHPISGCC 552
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00469 552 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 180 195 IPR018200 GO:0004843|GO:0006511
Cca05g00469 552 Gene3D Cysteine proteinases 173 530 - -
Cca05g00469 552 SMART Zf_UBP_1 55 102 IPR001607 GO:0008270
Cca05g00469 552 Pfam Ubiquitin carboxyl-terminal hydrolase 180 520 IPR001394 GO:0004843|GO:0016579
Cca05g00469 552 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 129 IPR013083 -
Cca05g00469 552 PANTHER UBIQUITIN C-TERMINAL HYDROLASE 22 6 548 - -
Cca05g00469 552 ProSiteProfiles Zinc finger UBP-type profile. 12 130 IPR001607 GO:0008270
Cca05g00469 552 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 6 548 - -
Cca05g00469 552 Pfam Zn-finger in ubiquitin-hydrolases and other protein 56 115 IPR001607 GO:0008270
Cca05g00469 552 SUPERFAMILY RING/U-box 13 118 - -
Cca05g00469 552 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 179 523 IPR028889 -
Cca05g00469 552 SUPERFAMILY Cysteine proteinases 175 522 IPR038765 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00469 Cca-Chr5 10216590 10220293 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00469 180 520 Miscellaneous Gene Families AT2G24640 30.086 2.24e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00469 K11366 - gmx:100806347 1068.91