Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00451 ATGGACGACcaacaacccaacaacaacaacaaccacaGCCAAGCTTCCGACAGCGACACCGACCCTTTCCTCCTAAACTACACAACCTCGGATCTCCGAACAGCTTCGGAGTTTCTGGCCACGTGGCTCCCTTTCCTCTCGCGAGATCTCTGCACCCGCTGCACCCAATCCCTCTCCGATCGCATCCGCTCCATCGACCCAGGGTCACGAAACGACACCGCCGAAGAGGCGAACGACGGCGAAGACAACTGCGACAACCATTCCCTCGGGAGCTGGAAGGACGGCGTCGCGGAGCCCAATTCCGGCGTGGGGGCCCCCAGCGCGCGGCTTTCTTGGGCCGACATGGCCCAAGAGGACGACGAGTTCGGCGAGGAGGAGCATGGCAATGGTGAAAACGGTGGGAGCGTTGTGGTGGCGAATTCGAGTGTTGGTGATGAGGGTAAAGTGGTTGCTGAGAAGCCTACTTTGCCTAGGGAGCAGAGGGAGTACATTAGGTTCATGAATGTGAGGCGCAAGAAGGACTTCATTTGCTTTGAGAGGGTTAATGGGAAGCTTGTCAACATTCTTGAAGGGCTTGAACTCCACACCGGGATTTTCAGCGCTGCTGAACAGAGGAGGATTGTTAATTATGTTGCTTCACTGCAGGAGATGGGGAGGAAGGGGGAATTGAAAGAACGGACATTTTCAGCTCCTCAAAAGTGGATGAGGGGCAAGGGACGTCAAACCATCCAATTTGGGTGCTGCTACAATTATGCTGTGGATAGAGATGGTAACCCACCTGGTATTCTTCCTCGTGCTATGGTTGATCCTATACCTGATCTTTTCAAGGTCATCATTCGGCGCCTGATCAAGTGGCATGTACTCCCTCCTACTTGTGTGCCAGACAGTTGCATTGTTAATATCTATGAAGAAGGGGATTGTATACCTCCACATATAGATAATCATGATTTTGTTCGGCCATTTTGCACTGTCTCATTTCTTAGTGAGTGCGATATAGTTTTTGGATCAAACTTGAAGATTGTAGGCCCGGGTGAATTTGATGGCTCGATTGCTATTCCGTTACCTCTGGGATCTGTACTTGTCTTAAACGGGAATGGAGCTGATGTAGCTAAGCATTGTGTGCCTGCAGTTCCTACAAAAAGGATATCAATCACATTTAGAAAAATGGATACATCCAAGCGCCCTTTTTCGTATGTTCCAGAACCTGATCTTCAGGGGATCCAACCATTGGCCTATGAAGCTGACCAGGTCCACCAGGAAAAGAAATCAAGTGGGCACCGACCTAGTCGTCATACGAAGAGATATAAAGACAGGAGAGGAGGTGGCAGGAACGATGCAATGGGATCTGCCCGTAGAAATGATAGGTTCTCAGAGCCCCGTGACTCAAACCTAAGTACACCAAGATCCGGAAATAGGTGGAGTAGGGTAAAGCCTGGTAGTTGA 1443 0.4948 MDDQQPNNNNNHSQASDSDTDPFLLNYTTSDLRTASEFLATWLPFLSRDLCTRCTQSLSDRIRSIDPGSRNDTAEEANDGEDNCDNHSLGSWKDGVAEPNSGVGAPSARLSWADMAQEDDEFGEEEHGNGENGGSVVVANSSVGDEGKVVAEKPTLPREQREYIRFMNVRRKKDFICFERVNGKLVNILEGLELHTGIFSAAEQRRIVNYVASLQEMGRKGELKERTFSAPQKWMRGKGRQTIQFGCCYNYAVDRDGNPPGILPRAMVDPIPDLFKVIIRRLIKWHVLPPTCVPDSCIVNIYEEGDCIPPHIDNHDFVRPFCTVSFLSECDIVFGSNLKIVGPGEFDGSIAIPLPLGSVLVLNGNGADVAKHCVPAVPTKRISITFRKMDTSKRPFSYVPEPDLQGIQPLAYEADQVHQEKKSSGHRPSRHTKRYKDRRGGGRNDAMGSARRNDRFSEPRDSNLSTPRSGNRWSRVKPGS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00451 480 Pfam 2OG-Fe(II) oxygenase superfamily 192 387 IPR027450 -
Cca05g00451 480 MobiDBLite consensus disorder prediction 65 88 - -
Cca05g00451 480 PANTHER RNA DEMETHYLASE ALKBH9B 14 88 - -
Cca05g00451 480 PANTHER RNA DEMETHYLASE ALKBH9B 98 474 - -
Cca05g00451 480 MobiDBLite consensus disorder prediction 119 144 - -
Cca05g00451 480 SUPERFAMILY Clavaminate synthase-like 188 389 - -
Cca05g00451 480 Gene3D - 176 395 IPR037151 -
Cca05g00451 480 MobiDBLite consensus disorder prediction 62 107 - -
Cca05g00451 480 MobiDBLite consensus disorder prediction 1 22 - -
Cca05g00451 480 MobiDBLite consensus disorder prediction 438 461 - -
Cca05g00451 480 MobiDBLite consensus disorder prediction 415 480 - -
Cca05g00451 480 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 98 474 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cca05g00451 480 PANTHER HYDROXYPROLINE-RICH GLYCOPROTEIN FAMILY PROTEIN-RELATED 14 88 IPR044842 GO:0003729|GO:0006402|GO:0032451
Cca05g00451 480 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 293 390 IPR005123 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00451 Cca-Chr5 9779086 9783348 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00451 K10767 - gmx:100797674 768.459