Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00449 ATGGAAGAGAGCAAAGCAAAAGAAGACAAAAGATTCCTTAACGAGGAGCCAAAAGGAAGCAAGAATAGAGGGTTGCTTCTTGCTTTTAGCTCTAGGAAGCTGCTTCACTTCTATTTTCAGTTGTTTGCTCCCAATTACTGGTCAATGGAACATAGTTTGAAAAGAAAGTCCCCAGAGAGTGGTCACCATCCACTCTTGAACACCTTTTCTCTGGATGATCTCAATGAGGACCTCTTGGAAAGGGTACTTTCGTGGCTACCAACTTCCTCATTCTTTCGCCTCACATCTGTGTGCAAAAGATGGAAGTCAGCTTCTGCTTCAGCGAGTTTCAAGCTTGCCTGCTCACGTGTTCCTTCACGTGATCCTTGGTTTCTGATGGTTGCTCCCAGCCTCAACCAATCTGTTGTCTTTGACTCTGCTGAAAACAATTGGAAAAGACTCAACCATTTGCACCTTTCGTGCGAAGATTCTAGCATAAGCTGCATTCCTGTTGCAGCCTCTGGTGGCCTAGTTTGCTACCGCAAACACTCCGGCGACTTTGTTGTGTGCAACCCTGTGACTGGATCGTGTAGTGACCTCCCTCCATTGCATTTTGCCCCAGAAAATCAGCCTCTCAATGCTGTTGTGATGAGCACAACTTCCATGGATCAAGTCTCATACAGGATTGTGTTGGTCTTTGGCGAACTCCCGAATCTTTTGTTTAAAGTCTACAACTCGAGCTCTGGCTGTTGGGAGGGCGAGATTGCACTGAGGAGGAAGGTTAACGATGACGATGATAATTCCATGGATTGTGATTCATCTGATGACAATGTTGTGTACTTCCTTAGCAAGGCTGGAACTGTGGTGGCAAGTAGCATGCAGAGAAGCCCTTCTAAGCAATATTCGTCGGTTATTACTAACAAAGATGGTCATGAGATAGTTTATTTTCTGAGCTCCTCAGGGACTGTTGTTGCTTGCAATTTAACATACAAGTGCTTCTTTGAGTACCCCAGGTTGTTGCCTGTTTTCAGTGAGTACTCCATTGATATCGTGGAGTGTGGCGGGGAGATGCTGGTTGTTTTGTTATCAGAATTCTTGGAAAGCACAAGTCTTAGGGTGTGGAAATTCGACGAGGCTAACCGGTGCTGGCAGCAGATTGCTGCAATGCCTGCAGCTATGTCTCAAGAGTGGTATGGAAAGAAGGCTGATATTAACTGTGTTGGAGCCGGCGATCGGATATTTATATGCTTGAACTCCCCTGAGCTGTGTACTTATGTTCTGTGTGATTTGGTGAGCAACAAATGGACCGAGTTGCCGAAATGTTGCTTGAATGGAGAAGTCATGGAGTTCATGTCTGCCTTCTCTTTTGAGCCCAGGATAGAGGCTTCTGTATGA 1374 0.4563 MEESKAKEDKRFLNEEPKGSKNRGLLLAFSSRKLLHFYFQLFAPNYWSMEHSLKRKSPESGHHPLLNTFSLDDLNEDLLERVLSWLPTSSFFRLTSVCKRWKSASASASFKLACSRVPSRDPWFLMVAPSLNQSVVFDSAENNWKRLNHLHLSCEDSSISCIPVAASGGLVCYRKHSGDFVVCNPVTGSCSDLPPLHFAPENQPLNAVVMSTTSMDQVSYRIVLVFGELPNLLFKVYNSSSGCWEGEIALRRKVNDDDDNSMDCDSSDDNVVYFLSKAGTVVASSMQRSPSKQYSSVITNKDGHEIVYFLSSSGTVVACNLTYKCFFEYPRLLPVFSEYSIDIVECGGEMLVVLLSEFLESTSLRVWKFDEANRCWQQIAAMPAAMSQEWYGKKADINCVGAGDRIFICLNSPELCTYVLCDLVSNKWTELPKCCLNGEVMEFMSAFSFEPRIEASV 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00449 457 PANTHER F-BOX PROTEIN FAMILY, ATFBX13-LIKE PROTEIN 64 457 - -
Cca05g00449 457 Pfam F-box domain 71 107 IPR001810 GO:0005515
Cca05g00449 457 Gene3D - 66 111 - -
Cca05g00449 457 ProSiteProfiles F-box domain profile. 68 103 IPR001810 GO:0005515
Cca05g00449 457 Gene3D - 125 449 IPR015915 GO:0005515
Cca05g00449 457 SMART fbox_2 74 114 IPR001810 GO:0005515
Cca05g00449 457 PANTHER F-BOX/KELCH-REPEAT PROTEIN 64 457 - -
Cca05g00449 457 SUPERFAMILY Galactose oxidase, central domain 134 385 IPR011043 -
Cca05g00449 457 SUPERFAMILY F-box domain 63 127 IPR036047 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00449 Cca-Chr5 9763935 9766360 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00449 - - gmx:100801096 718.383