LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Cca05g00448	ATGCTTGTTGTCGTTGGAGTATCGTGGGATCTGAATTGGTTCCTGCAACTGTTGCTCTCCGTCATCGTCGTCGCCGTCGGGGTCCACATTTTCGTCAAGACCACCGCATCCAAATACTTCGAGGTCGACGCTAATTTCGAAGGGGATcaccaccaccaccaccaccaccaacacgccctcgccgacgcaatgcccggcgttctcgcccccgcccccgccGCAGCCGATCCTCTCTGCGCCGTCTGCGCCACGCGCGCCACCAAGAAGTGCTCGCGCTGCAAGGCTGTTCGCTATTGCTCACAGGAATGCCAGCAGTCGCATTGGAAGTCTGGGCATAAGACCGTATGTAAGGATTTTCATGACGCCAGTGTAAGAAGCTCGGCACAGAATGGGGTAGTTAATAGTGGGTTTAAGACTTCTGCTGCTGGGGGTAAAAGCTCGTCGTTGATTGCATTGATACCTGGTTGTGGAGAAGTTTCCAGGCCAATCAAGAAGCTGCCTAAAGATGTTCTTTTTCCTTACAATGAATTTGTCAAGTTGTTTAATTGGGACAAACCAGGATTTCCACCATGTGGACTCTTGAATTGTGGAAACAGTTGCTTCGCAAATGTGGTTCTCCAGTGTCTCTCATTCACTAGGCCACTTGTTGCCTACTTGTTAGAGAAGGGCCACCGCCGAGAATGCAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAACCATGTTGAAAGAACAAGGCTAAGTTCACAGCCATTTTCTCCGATGAATATTCTCTCTCGTTTGCCTAATATTGGTGGTACATTGGGATATGGAAGACAAGAGGATGCTCATGAATTCATGAGtttttCCATTGATGCTATGCAATCTGTTTGCCTTGATGAGTTTGGTGGAGAAAAGGCTGTCCCTACTAACCTTCAGGAGACAACTCTTATTCAACACATATTTGGTGGCCGCCTTCAATCTGAGGTGATTTGCACAAAATGTGATAAGATTTCAAATCAGTATGAACATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGTCTCCTTGGAGGAATGTCTAGATCAGTTTACTGCCAGGGAGCGGCTTGATGGGGAAAATAAGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGTGCTCCAAACATTCTTACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAACTTAACAAGAGAATAGCCTTCCCTGAGACTTTAAATCTTAGTCCTTACATAAGTGAAACTGGAGATGGATCTGATATTTATAAGTTATACGCTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAGGATTTTGGGGGAAACTGGTATAGGATTGATGACTTGAAGGTTATGACTGTGGAGTTGGAAGAGGTACTTTCTCAGGGAGCATACATGCTCTTGTACAGCAGGTGTAGTGCCCGGCCATCAGGCCTTCAAAATCAAACTAATGAATCTTCTGGCATAGCAGAAGTGCAAACAACAGAAGTGGAAGTGGAGCCCGGACAAACTGAACGAGATGAATGCATCTCAAATATGAAGACTTTGACTCATAGTAGAGGTTCTGAGGTTTTGCCATCTTATATTTGTCCAGAATCGAAAGTTTCTTCCAGCAGCCATGCTGGATTGAACTCACAAGCCAAAAGTGAGCAGCCTGAGGGTATGGACATGATGGATGTTGATTCAAATGGCATTGCAAATGAGATTTCTTGTAGTGCTGTTGAATCATCTTATGTGCCTATTTCTCAAACCGTCAGAGATTTGGGGGACGTTGATATGAGCAGGTCTTTAGAAGAGACTACCGGCTGCAAGGAAGAGCAAGATAATAGCAATATGGCTAGATATGGTTCTTCTCCGGGTTTACCAAATGACTCAACCTTTGATAAACATTCTTCTATTTCAAGGGATTATCAAAACATGGAAGGTTCCGAACGTATTGATGTGGTTAAATGCAAGTTGATTACTGCTAAAGATAATGCATATTATGGTAATGGATATGTCAGTGCAAACAAGTCCGCTATACCAGTTGAAGATGCTGGCACACGATTTTCTGGTGTTGGTTCTTTTCCCACTGAAAATGACAGAGAAAATGGAATCAAGAAAATGGAAATATCAGCTGACATCTAG	2202	0.4146	MLVVVGVSWDLNWFLQLLLSVIVVAVGVHIFVKTTASKYFEVDANFEGDHHHHHHHQHALADAMPGVLAPAPAAADPLCAVCATRATKKCSRCKAVRYCSQECQQSHWKSGHKTVCKDFHDASVRSSAQNGVVNSGFKTSAAGGKSSSLIALIPGCGEVSRPIKKLPKDVLFPYNEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTRLSSQPFSPMNILSRLPNIGGTLGYGRQEDAHEFMSFSIDAMQSVCLDEFGGEKAVPTNLQETTLIQHIFGGRLQSEVICTKCDKISNQYEHMMDLTVEIHGDAVSLEECLDQFTARERLDGENKYKCEGCKDYVKAWKRLTVKCAPNILTIALKRFQSGRFGKLNKRIAFPETLNLSPYISETGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFGGNWYRIDDLKVMTVELEEVLSQGAYMLLYSRCSARPSGLQNQTNESSGIAEVQTTEVEVEPGQTERDECISNMKTLTHSRGSEVLPSYICPESKVSSSSHAGLNSQAKSEQPEGMDMMDVDSNGIANEISCSAVESSYVPISQTVRDLGDVDMSRSLEETTGCKEEQDNSNMARYGSSPGLPNDSTFDKHSSISRDYQNMEGSERIDVVKCKLITAKDNAYYGNGYVSANKSAIPVEDAGTRFSGVGSFPTENDRENGIKKMEISADI	733

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Cca05g00448	733	MobiDBLite	consensus disorder prediction	625	657	-	-
	Cca05g00448	733	Gene3D	-	71	122	-	-
	Cca05g00448	733	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	192	207	IPR018200	GO:0004843\|GO:0006511
	Cca05g00448	733	Pfam	Ubiquitin carboxyl-terminal hydrolase	191	494	IPR001394	GO:0004843\|GO:0016579
	Cca05g00448	733	Gene3D	Cysteine proteinases	187	509	-	-
	Cca05g00448	733	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	191	497	IPR028889	-
	Cca05g00448	733	MobiDBLite	consensus disorder prediction	559	579	-	-
	Cca05g00448	733	CDD	Peptidase_C19E	190	495	-	-
	Cca05g00448	733	SUPERFAMILY	Cysteine proteinases	187	506	IPR038765	-
	Cca05g00448	733	ProSiteProfiles	Zinc finger MYND-type profile.	79	116	IPR002893	-
	Cca05g00448	733	MobiDBLite	consensus disorder prediction	559	576	-	-
	Cca05g00448	733	MobiDBLite	consensus disorder prediction	631	653	-	-
	Cca05g00448	733	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19	20	648	-	-
	Cca05g00448	733	SUPERFAMILY	HIT/MYND zinc finger-like	76	120	-	-
	Cca05g00448	733	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	20	648	-	-
	Cca05g00448	733	ProSitePatterns	Zinc finger MYND-type signature.	79	116	IPR002893	-
	Cca05g00448	733	Pfam	MYND finger	79	116	IPR002893	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Cca05g00448	Cca-Chr5	9755636	9763388	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Cca05g00448	5	502	Miscellaneous Gene Families	AT4G31670	64.659	0.0	647

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Cca05g00448	K11855		-	gmx:100799652	1226.46