Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00434 ATGAAAACTGAAGCGAATGCAAAAGGAAAAATGGTCTCTGCGACGAACCCTAACCCTAAAAATGTGTACCACATCGGAGGCCTTCAAGTGGAATTTCCTTACCAACCGTACGGGTCTCAGTTTGCATTCATGGGTAGAGTAATCTCAACGCTTGATCGAGCTCAGAGAGAAGGCCATTGTCACGCGTTGCTCGAGTCTCCAACCGGTACTGGCAAGTCCCTTTCGCTTCTCTGTTCCTCTCTCGCTTGGCAGCGCCAATATAAAGATAAAGCTAAACAGCACAAACTCAACCTCGCTACGGAGGCAACCACCGATCCTCTTGCTCATGGCGGCGGATTTGTTCCGGAGGAGGTTTCGCTTTCTTCTGCATCAGAAAATGTGGACCGTACGCAGCCTGAGGTCGGCAACAAGAAGCAGAAGAAAAAGGAAGCGCCGACTATATATTATGCCTCGAGAACGCACTCGCAAATTTCTCAAGTGATTCGTGAATTGCGGAAAACGGCATACAGGGTGCCTATGGCTGTGTTGGCATCACGGAAGCATTATTGCACAAATAAAAATATAATTGGCAAAGATAATATCAATGAAGAATGTAAACTATTATTGAAAGATCAGGAAACAGGGTGTCCGGAATTCAAAAATGCACATAAAGTCAAAAGTCATCAATCCCTTCAGAAAGGAGGATGCAATGAGGTGCATGACATAGAAGATCTTGTAAAAGTTGGGCAAGTGGTAAAAGGTTGCTCTTATTATGCAGCTCGTTCTATGTCAGATGATGCACAGTTGGTATTCTGTCCATATAACTACATCATTAATCCAGTAATACGGGCAGCAATGGATGTGGATATTAAAGGAGCCATAGTGATTCTTGATGAAGCTCACAATATAGAGGACATTTCTCGTGATGCTGGCAGTGTGGATCTTGAAGAGGATGTTTTGGATAAACTACAAATGGAGCTCCAGCAACTTTGTTCTGTTAATGCTGCAATTTACCAACCGCTATATGAAATGGCACAGGGCCTTACTAGTTGGATGGAACAAAAGAAAAACAAGCTAGAAAAACGTGATTTTCAGCACTATGTGTCGTGTTGGACTGGTGATAATGCTTTAAGAGAGCTTGAAGAAGCAAATATTTCAAAGCAGTGTTTCCCTATCTTGCTAGAATGTGCTACCAAGGCAATCAAAATTGCTACTGACTTGGAGACTGATGCACAGCATTTAAGTGGCATGTCAGTGATAACATTGGAAGGCTTTTTCTCATCACTGACTTATTTCTTCTCAAGAAATGGATCTCACATGTTGGATTACCAGCTTGCTCTTCAGCGATGTGTTAGAAAAGATAGTGGAAGAGCTTTTGGAAACTGGACACACACTCTAAGTTTATGGTGCTTGAATCCAGCAGTTGTGTTTAGAGATGTTGCTGATCTTTCTTTATCAGTCATCTTGACTTCTGGGACACTGTCACCAATGACTTCCTTTTCTTCCGAGCTTGGAGTTCATTTTGAAACTAGTCTAGAAGCTCCTCATGTAATTGATGTTGACTCACAGGTGTGGCCTGCTATAATCTCCACTGGGCCAGGCAATTATCCTCTGAATGCAAGTTATAAAACAGCAGATGGATATGCATTCCAGGATGCGGTTGGAAAATCTTTAGAGGAAATCTTCAAGATTGTTCCAGGTGGATGTCTAGTGTTCTTTCCAAGTTATAAATTGATGGAAAAATTATGCAACCGTTGGTCTGAAACAGGTCAATGGTCTAGGCTAAATGCAGAAAAGTCTCTTTTTGTTGAACCAAGAGCTGGAAGCCAAGATGATTTTGAACTTACAATAAAGGGGTATTATGATTCAATTCATCATGGAAAAAGACCTGCATTGGGAGGGAAAAAAAGGATTAAGAAAAGTGATCTAAATCATGTTCATGCAGTCGATTCCTTACAGAATTCTATGAAAGGAGGAGCTGCTTTACTTGGTGTTTGTCGAGGAAAGGTTTCTGAAGGTATTGATTTCTCTGATGATAATGCCAGAGTAGTTATTATTGTTGGTATTCCATTTCCCAACATAAATGATATTCATGTTGCACTGAAGAAGAAATTTAATGACACCTACAAATCATCCAAAAATCTATTGAGTGGAAATGAGTGGTACTGCCACCAAGCATTCAGAGCTTTAAATCAAGCAGCAGGGCGCTGTATTCGACATAAACTTGATTATGGAGCAATCATCCTATTGGATGAACGTTTTCGGGAAGAAAGAAATAGGGCATTCATTTCAAAGTGGCTAAGAAGACCGCTGAGAGTATATGACAGGTTTGATATGTCATTGGAGGGACTAAAATCATTCTTTGAGGATGCCAAGGAACAATATGGCATAAATACAGTGCATGCCACCAAGAAGTTGGGTTTAAATGACGAGGATGTACAAAACAAGGATCGGAGTGCAAGGTTCACAAGAAAGAAAAATCAGAAACTGAACAAGTCTGATAATGGAGATGGGAGAGAAACATCATTGATTCAGACTAACATCTCTTTTCCCACACTAACCCCTCAAGATCTTGTTGAAAGCAAGCCATTAGCTCAAAAGAATAGTAACACATACAAGTGTAAATATCACTCACAATGCTGTAATCAGACAGAGCCAAGGTTCACTGGGGAATCATCTGTGGCAATCATACATGAGGAAACTTCCATTGTCAAGGAAACCCCTTGCATTGATGTTGATGACGATCTCAGTAGCCCAGATTACTCTAAGAATGACAACTTTGGTTCCACCATGATTGAGGCCCCAGCTCCATCTGCAGATCACTTATCAAGTCTTTCAATGTCTTTAACCAGCGGAAGTAAAAATTCTTCAAGGGCCCAGTCTTCAATAACAATTACTCCTAAAAAAAATGTAATTACAAATGATATTCTAGAAAAGGAATCATCTTTGAATTTAAGTGTTAATTCTCACAATCCAAAAAGGAGAAAGGCCATGGTCACTCCGTTTATAAACCTCGTTGAGGAAGAAAATTTTACTGCATCTTGTGCCAGTCCTCTTACATGGTACAGAAAAAGCTCTGTAGATATTAGAGAGATATCTCAAGGAAGTGAATGTGGTTTTGAGAGAACTTTGAAATCAAATTCTTCTTCATTACTGACAAGCAATATACCTGGTTCATGTTCACCAACTGCCCCTCCACCGGACAAAAGGTTACAGATATTTTGTTCACACTGCAAAGGTCCATTGGGCCGACCTGAGAATCATCTCTATCTTACATGCTTGTTGAATTCATTATCAAAAGTCCATTTAAGATCCCTTTTGAAACAGAGGCTGAAAACTTGCACTACTGATAGTGTACCAGTTATTATTACTGATTCTTTATTTGTTGACCAACGAATTTGCAATAGAATACCCAAAAGTGCTCCAGAACAGGGTATTTGGTGTCCAGAAGATGGGTGTGTCTTCAGCACTATTTTCTGTCCCTTTTGCAGTAATATCGACAATTTGCTAGGAGTTCAGATCATGGCTACCGATTCATCAAATGTTCAGTTACTTGACAAGATATTGTTTTTCTTTGACTCTTTGGAAGTGAAGAGCGGCGAGGAGTCAGGGAACATTGCTTCAGGGGAAGGGGATCTGTTGCCAGTTAATGACTCTGGCATGGAGAAAATTGCTGTCTTAAATTCTATTGAGAAATATTCTTATCATCCCCAACCAGGGAATTCAGAAATCTCGAAGACTACTAGAAAATCTAAGCAAAAACTAAGAGGCTTGCACCGTGCAGCAAACCAAAGTTGA 3777 0.4035 MKTEANAKGKMVSATNPNPKNVYHIGGLQVEFPYQPYGSQFAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQRQYKDKAKQHKLNLATEATTDPLAHGGGFVPEEVSLSSASENVDRTQPEVGNKKQKKKEAPTIYYASRTHSQISQVIRELRKTAYRVPMAVLASRKHYCTNKNIIGKDNINEECKLLLKDQETGCPEFKNAHKVKSHQSLQKGGCNEVHDIEDLVKVGQVVKGCSYYAARSMSDDAQLVFCPYNYIINPVIRAAMDVDIKGAIVILDEAHNIEDISRDAGSVDLEEDVLDKLQMELQQLCSVNAAIYQPLYEMAQGLTSWMEQKKNKLEKRDFQHYVSCWTGDNALRELEEANISKQCFPILLECATKAIKIATDLETDAQHLSGMSVITLEGFFSSLTYFFSRNGSHMLDYQLALQRCVRKDSGRAFGNWTHTLSLWCLNPAVVFRDVADLSLSVILTSGTLSPMTSFSSELGVHFETSLEAPHVIDVDSQVWPAIISTGPGNYPLNASYKTADGYAFQDAVGKSLEEIFKIVPGGCLVFFPSYKLMEKLCNRWSETGQWSRLNAEKSLFVEPRAGSQDDFELTIKGYYDSIHHGKRPALGGKKRIKKSDLNHVHAVDSLQNSMKGGAALLGVCRGKVSEGIDFSDDNARVVIIVGIPFPNINDIHVALKKKFNDTYKSSKNLLSGNEWYCHQAFRALNQAAGRCIRHKLDYGAIILLDERFREERNRAFISKWLRRPLRVYDRFDMSLEGLKSFFEDAKEQYGINTVHATKKLGLNDEDVQNKDRSARFTRKKNQKLNKSDNGDGRETSLIQTNISFPTLTPQDLVESKPLAQKNSNTYKCKYHSQCCNQTEPRFTGESSVAIIHEETSIVKETPCIDVDDDLSSPDYSKNDNFGSTMIEAPAPSADHLSSLSMSLTSGSKNSSRAQSSITITPKKNVITNDILEKESSLNLSVNSHNPKRRKAMVTPFINLVEEENFTASCASPLTWYRKSSVDIREISQGSECGFERTLKSNSSSLLTSNIPGSCSPTAPPPDKRLQIFCSHCKGPLGRPENHLYLTCLLNSLSKVHLRSLLKQRLKTCTTDSVPVIITDSLFVDQRICNRIPKSAPEQGIWCPEDGCVFSTIFCPFCSNIDNLLGVQIMATDSSNVQLLDKILFFFDSLEVKSGEESGNIASGEGDLLPVNDSGMEKIAVLNSIEKYSYHPQPGNSEISKTTRKSKQKLRGLHRAANQS 1258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00434 1258 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 56 743 IPR027417 -
Cca05g00434 1258 Pfam Helicase C-terminal domain 551 761 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cca05g00434 1258 Pfam DEAD_2 149 312 IPR010614 GO:0003677|GO:0003678|GO:0005524
Cca05g00434 1258 MobiDBLite consensus disorder prediction 119 142 - -
Cca05g00434 1258 PANTHER FANCONI ANEMIA GROUP J PROTEIN 18 1129 - -
Cca05g00434 1258 Gene3D - 36 353 IPR027417 -
Cca05g00434 1258 CDD SF2_C_XPD 515 747 - -
Cca05g00434 1258 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 18 1129 IPR045028 -
Cca05g00434 1258 MobiDBLite consensus disorder prediction 936 955 - -
Cca05g00434 1258 SMART Cxpdneu3 569 749 IPR006555 GO:0003676|GO:0004386|GO:0005524|GO:0006139|GO:0016818
Cca05g00434 1258 MobiDBLite consensus disorder prediction 1229 1258 - -
Cca05g00434 1258 Gene3D - 528 773 IPR027417 -
Cca05g00434 1258 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 26 363 IPR014013 GO:0005524
Cca05g00434 1258 SMART deadxpd 28 331 IPR006554 GO:0003678|GO:0016818
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00434 Cca-Chr5 9519483 9535967 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00434 K15362 - gmx:100779610 2095.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00434 05 9519483 9535967 Cca05g00434 05 9519483 9535967 ECH