Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00385 ATGACTTGGTTGTATTTGCAGCCCACAGTAGACATCAAGACAGTGTTATCTCAGTTAATGGACAGGTTGTCAAATTATGCTTCCTCAAGTACTGAAGTATTGCCTGAATTTCTGCAAGTGGAAGCATTTACCAAATTAAGCACAGCAATAGGCAGGGTTATAGAAGCACAAGTTGACATGCCTCTAGTGGGAGCAATATCTTTGCATGTTTCTCTACTTACATTTACTCTCCGTGTTCATCCAGATCGGCTTGATTATGTGGACCAAGTACTGGGATCATGTGTTAAGAAACTTTCTGGAAAACCAAAGCTCGATGACAATAGAGCAACAAAGCAAGTTGTTGCACTTTTAAGTGCTCCACTTGATAAATACAATGATATTGTGACTGCTCTGACACTGTCCAATTATCCTCGAGTAATGGATCATCTTGATCATGAAACAAATAAAGTCATGGCCATGGTTATTATCCAAAGCATTATGAAGAATAACACTTACATCTCTACTGCTGATAAGGTTGAAGTTTTATTTGAATTAATAAAAGGGCTTATAAAGGACTTGGATGAAACAACTGAGGATGAGGTTGATGAAGAAGATTTTAATGAGGAACAAAATTCTGTCGCTCGCCTTATCCACATGCTTCATAATGATGACCCAGAGGAAATGTTTAAGATAATATGTACCGTAAAGAAGCATATTATGAGTGGAGGACCAAGGCGCTTACCTTTTACAGTTCCTTCCCTGATATTTTCTGCACTTAGGTTGATCAGGCAATTGCAAGGGCAGGATGGAGATATAGTGGGAGAAGAAGTTCCTACAACACCAAAAAAAATATTTCAACTTTTAAATGAGACCATTGAAGCTCTTGCTTCTGTATCATCTCCTGAACTGGCCCTGAGACTGTCTCTGCAATGTGCTGGGGCTGCTAATGACTGTGACCTGGAGCCTGTTGCTTATGAATTTTTCACTCAGGCATTCATATTATATGAAGAAGAAATTGCGGACTCTAAAGCCCAGGTAACTGCAATACATTTAATTATCGGGACTCTTCAGAGAATGCACGTCTTTGGCATTGAGAACAGGGATACATTAACACACAAGGCCACAGGGTATTCAGCGAAGCTTTTGAAGAAACCTGATCAGTGTCGAGCAGTTTATGCATGCTCTCATCTCTTTTGGGTTGATGATCAAGATGGTATTAAAGATGGAGAAAGGGTATTGCTTTGCCTTAAGCGTGCTTTGAGGATTGCAAATGCTGCTCAACAAATGGCCAATGTAGCTAGGGGTAGCAGTGGTCCAGTAACGCTATTTGTTGAAATACTGAACAAGTACATTTACTATTTTGAGAAAGGAAACCCGCAGATCACTAGTTCTACTATCCAGGGGCTTATAGAATTGATCACGACTGAGATGCAGAGTGACTCTGTAACAGCTCTTCCAGCTTCAGATGCTTTTTTTACTGGCACATTGAGGTACATCCAATTCCAGAAACAGAAGGGTGGTATACTAGGTGAAAAATATGACCCTATCAAGGTCTACATCCCTGCCTAG 1548 0.4025 MTWLYLQPTVDIKTVLSQLMDRLSNYASSSTEVLPEFLQVEAFTKLSTAIGRVIEAQVDMPLVGAISLHVSLLTFTLRVHPDRLDYVDQVLGSCVKKLSGKPKLDDNRATKQVVALLSAPLDKYNDIVTALTLSNYPRVMDHLDHETNKVMAMVIIQSIMKNNTYISTADKVEVLFELIKGLIKDLDETTEDEVDEEDFNEEQNSVARLIHMLHNDDPEEMFKIICTVKKHIMSGGPRRLPFTVPSLIFSALRLIRQLQGQDGDIVGEEVPTTPKKIFQLLNETIEALASVSSPELALRLSLQCAGAANDCDLEPVAYEFFTQAFILYEEEIADSKAQVTAIHLIIGTLQRMHVFGIENRDTLTHKATGYSAKLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVTLFVEILNKYIYYFEKGNPQITSSTIQGLIELITTEMQSDSVTALPASDAFFTGTLRYIQFQKQKGGILGEKYDPIKVYIPA 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00385 515 PANTHER VACUOLAR SORTING PROTEIN 35 6 511 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cca05g00385 515 Pfam Vacuolar protein sorting-associated protein 35 4 468 IPR005378 GO:0015031|GO:0030906|GO:0042147
Cca05g00385 515 Gene3D - 186 496 IPR042491 -
Cca05g00385 515 PANTHER VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35A 6 511 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00385 Cca-Chr5 8355870 8362043 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00385 K18468 - gmx:100775573 935.636
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00385 05 8355870 8362043 Cca05g00385 05 8355870 8362043 ECH