Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00375 ATGAGGAAGTGGACGGTTGCTTCCGctctcgttctgctctgtctcctctctctctTCGCAGATCAAGGTCGAAATTTTCAGGCGAATGCGGAGGGCGATTCCGACGAGCTTGTAGATCCACCGAAGGTGGAGGACAAGATCGGTGCTGTTCCTCATGGACTTTCCACCGATTCAGATGTGGCCAAAAGGGAGGCGGAGTCGATCTCGAAGAGATCTCTTCGGAGCAACGCGGAGAAGTTTGAGTTCCAAGCCGAAGTGTCGCGGCTTATGGATATTATCATCAACTCGCTCTACAGTAACAAAGACATATTCCTCAGGGAGTTGATTTCCAACGCATCTGACGCTTTGGACAAGATTAGGTTCCTCTCCCTTACGGATAAGGAGGTTTTGGGAGAAGGTGATAACACCAAGCTTGATATTCAGATTAAGTTAGACAAGGAGAAGAAAATTCTCTCAATTCGGGACAGGGGTATTGGTATGTCGAAGGAGGATTTAATAAAGAATTTGGGAACCATTGCAAAATCTGGAACTTCAGCATTTGTTGAGAAGATGCAAACAAGTGGAGATCTCAATTTGATTGGGCAGTTTGGTGTCGGCTTCTACTCTGTGTATCTTGTGGCAGACTACGTTGAAGTCATTAGCAAGCATAATGATGACAAGCAGTATGTATGGGAATCTAAAGCTGATGGAGCATTTGCGATTTCGGAAGATACATGGAATGAACCTCTAGGGCGTGGAACTGAGATTAGATTGCACCTCAAGGAAGAGGCTGGGGAGTATTTGGAAGAGTCTAAATTGAAAGAATTGGTGAAGAGATACTCTGAATTTATTAACTTCCCTATCTATCTTTGGGCAAGCAAAGAGGTTGATGTCGAGGTTCCTGCTGATGAAGATGATTCCAGTGATGAAGATGATTCGGCAGAAAGCACCTCCAAGGAAGAAAGCGAGGATGAAGATGAAGAAAAGAAGCCCAAGACAAAGACAGTGAAGGAAACAACTTATGAATGGGAACTTTTAAATGATGTTAAAGCTATATGGCTGAGGAATCCAAAGGAGGTTACAGAAGAAGAATACACCAAATTTTACCACTCTCTTGCCAAGGATTTCAGTGATGAGAAACCTTTATCATGGAGTCACTTCACTGCTGAAGGAGATGTCGAGTTCAAGGCAGTTCTGTTTGTACCACCTAAGGCACCTCAAGATTTGTATGAGAGCTATTATAACGCAAACAAATCCAACCTGAAGCTGTATGTTAGACGAGTGTTCATTTCAGATGAATTTGATGAACTGCTGCCTAAGTACCTGAACTTTTTGAGGGGTCTTGTTGATTCTGACACATTGCCACTTAACGTATCGAGAGAAATGCTTCAACAACACAATAGTCTTAAGACAATCAAGAAGAAACTTATTAGAAAGGCCCTTGATATGATCCGTAGGATTGCAGATGAGGATCCTGACGAGTCCACTGACAAAGAAAAGAAAGATGATGTGTCCTCTGACAACGACGAGAAGAAAGGTCAATATAGTAAGTTCTGGAATGAGTTTGGTAAGTCCATTAAACTTGGTATCATTGAGGATGCAACCAACAGAAATCGTTTGGCAAAACTGCTCAGATTTGAGAGCACCAAGTCTGAGGGTAAATTGACATCTTTGGATCAGTACATATCTAGAATGAAATCTGGGCAGAAGGATATCTTTTACATAACTGGAACCAACAAAGAACAACTGGAAAAATCTCCATTCCTTGAGCGGCTTAAGAAGAAAAATTTTGAGGTTATTTACTTCACGGATCCAGTTGATGAATACTTGATGCAATACCTGATGGATTATGAAGATAAGAAGTTCCAAAATGTGTCCAAGGAGGGTTTGAAACTTGGAAAGGATTCAAAAGACAAGGAACTTAAGGAATCCTTCAAGGACCTTACCAAGTGGTGGAAGAGTGCTCTTTCCAAAGACAACGTTGATGATGTGAAGATATCCAACAGATTGGATAACACTCCTTGTGTAGTGGTGACATCGAAGTTTGGTTGGAGTGCTAACATGGAGAGAATCATGCAGTCTCAAACTTTGTCCGATGCTAGCAAGCAAGCATACATGCGTGGCAAGAGGGTTCTCGAGATCAATCCTAGACACCCTATTATCAAGGAGCTCCGGGAGAGAGTAGTAAAGAACCCTGAGGATGAGGGTGTGAAACATACAGCACAGCTGATGTACCAGACTGCACTCTTCGAAAGTGGTTTCTTGCTTGATGATCCCAAGGATTTCGCATCCCGTATTTATGATTCAGTGAAGTCTAGCTTAGACATCAGCCCTGAAGCAACAGTTGAAGAGGAAGACGACACCGAAGTAGAGGCTGAAAGTGATGCAAAAGAAGATGCATCTACTTCGAAGCCTGAAGCTGATGATGGTGATGTCAAGGACGAGTTGTAG 2430 0.421 MRKWTVASALVLLCLLSLFADQGRNFQANAEGDSDELVDPPKVEDKIGAVPHGLSTDSDVAKREAESISKRSLRSNAEKFEFQAEVSRLMDIIINSLYSNKDIFLRELISNASDALDKIRFLSLTDKEVLGEGDNTKLDIQIKLDKEKKILSIRDRGIGMSKEDLIKNLGTIAKSGTSAFVEKMQTSGDLNLIGQFGVGFYSVYLVADYVEVISKHNDDKQYVWESKADGAFAISEDTWNEPLGRGTEIRLHLKEEAGEYLEESKLKELVKRYSEFINFPIYLWASKEVDVEVPADEDDSSDEDDSAESTSKEESEDEDEEKKPKTKTVKETTYEWELLNDVKAIWLRNPKEVTEEEYTKFYHSLAKDFSDEKPLSWSHFTAEGDVEFKAVLFVPPKAPQDLYESYYNANKSNLKLYVRRVFISDEFDELLPKYLNFLRGLVDSDTLPLNVSREMLQQHNSLKTIKKKLIRKALDMIRRIADEDPDESTDKEKKDDVSSDNDEKKGQYSKFWNEFGKSIKLGIIEDATNRNRLAKLLRFESTKSEGKLTSLDQYISRMKSGQKDIFYITGTNKEQLEKSPFLERLKKKNFEVIYFTDPVDEYLMQYLMDYEDKKFQNVSKEGLKLGKDSKDKELKESFKDLTKWWKSALSKDNVDDVKISNRLDNTPCVVVTSKFGWSANMERIMQSQTLSDASKQAYMRGKRVLEINPRHPIIKELRERVVKNPEDEGVKHTAQLMYQTALFESGFLLDDPKDFASRIYDSVKSSLDISPEATVEEEDDTEVEAESDAKEDASTSKPEADDGDVKDEL 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00375 809 Hamap Chaperone protein HtpG [htpG]. 75 764 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g00375 809 Gene3D - 341 533 - -
Cca05g00375 809 PIRSF HSP90_HTPG 54 807 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g00375 809 MobiDBLite consensus disorder prediction 293 328 - -
Cca05g00375 809 Gene3D - 65 300 IPR036890 -
Cca05g00375 809 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 78 287 IPR036890 -
Cca05g00375 809 Pfam Hsp90 protein 259 792 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g00375 809 ProSitePatterns Heat shock hsp90 proteins family signature. 98 107 IPR019805 GO:0005524|GO:0006457|GO:0051082
Cca05g00375 809 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 19 795 IPR001404 GO:0005524|GO:0006457|GO:0016887|GO:0051082|GO:0140662
Cca05g00375 809 SMART HKATPase_4 100 257 IPR003594 -
Cca05g00375 809 Gene3D - 534 621 - -
Cca05g00375 809 MobiDBLite consensus disorder prediction 772 787 - -
Cca05g00375 809 MobiDBLite consensus disorder prediction 293 315 - -
Cca05g00375 809 SUPERFAMILY HSP90 C-terminal domain 640 762 IPR037196 -
Cca05g00375 809 MobiDBLite consensus disorder prediction 788 803 - -
Cca05g00375 809 Gene3D - 628 774 IPR037196 -
Cca05g00375 809 PANTHER BNAA08G14800D PROTEIN 19 795 - -
Cca05g00375 809 MobiDBLite consensus disorder prediction 481 505 - -
Cca05g00375 809 MobiDBLite consensus disorder prediction 767 809 - -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 78 98 IPR020575 -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 99 121 IPR020575 -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 150 167 IPR020575 -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 168 185 IPR020575 -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 193 215 IPR020575 -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 245 262 IPR020575 -
Cca05g00375 809 PRINTS 90kDa heat shock protein signature 263 281 IPR020575 -
Cca05g00375 809 SUPERFAMILY Ribosomal protein S5 domain 2-like 342 621 IPR020568 -
Cca05g00375 809 CDD HATPase_Hsp90-like 87 277 - -
Cca05g00375 809 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 101 256 IPR003594 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00375 Cca-Chr5 8206739 8212185 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00375 K09487 - gmx:100779976 1436.01
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00375 05 8206739 8212185 Cca05g00375 05 8206739 8212185 ECH