Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00372 ATGGATCACCCAACACTATCATTACTTTCATTCATACTAACATTTCATCTATTACAATCAGGGGTTATTTCAACGACATTCACTCTAGTTAACAAATGCGACTACACGGTGTGGCCGGGGATTCTCTCCAACGCCGGCGTTCCTCCGCTCCCAACCACCGGCCTCGTTCTGCACACCGGCGAGTCGAGCACGATAACCGCACCCGCCTCCTGGGGCGGGCGCTTCTGGGGCCGAACGCTCTGCGCCGAAGACTCCGCCGGAAAATTCTCCTGCGTCACCGGCGACTGCGGGTCGGGAAAGGTGGAGTGCGGCGGCAGTGGCGCCACCCCGCCGGCCACCCTGGCGGAGTTCACTCTGGACGGCGCCGGGGGGCTGGACTTCTTCGACGTGAGCCTGGTGGACGGCTACAACGTGGCGATGCTGGTGGTCCCGCAGGGCGGCTCCGGCGAGAAGTGCGCCGCGACGGGGTGCGTGGGCGACCTGAACGGCGCGTGTCCGTCGGAGCTGAAAGTGACGGGCGCCGACGGGAGGGAGGGCGTGGCGTGCAAGAGCGCGTGCGAGGCCTTCAACGCGCCCCAGTATTGCTGCAGCGGCGCGTACGCCACGCCCGACACGTGCAAGCCCTCCTCTTACTCGCAGATCTTCAAGAGCGCTTGCCCACGCGCTTATAGCTACGCCTACGACGACAAGACCAGCACCTTCACTTGCGCTTCCGCCGATTACACCATCACCTTTTGCCCTTCCCCTACCACCAGGTTTCTACTTTCTTCCCCCAACCAAGCCTTCATAATTAGTTAA 798 0.619 MDHPTLSLLSFILTFHLLQSGVISTTFTLVNKCDYTVWPGILSNAGVPPLPTTGLVLHTGESSTITAPASWGGRFWGRTLCAEDSAGKFSCVTGDCGSGKVECGGSGATPPATLAEFTLDGAGGLDFFDVSLVDGYNVAMLVVPQGGSGEKCAATGCVGDLNGACPSELKVTGADGREGVACKSACEAFNAPQYCCSGAYATPDTCKPSSYSQIFKSACPRAYSYAYDDKTSTFTCASADYTITFCPSPTTRFLLSSPNQAFIIS 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00372 265 ProSiteProfiles Thaumatin family profile. 24 247 IPR001938 -
Cca05g00372 265 CDD TLP-PA 26 246 - -
Cca05g00372 265 PIRSF PR5 2 265 IPR001938 -
Cca05g00372 265 ProSitePatterns Thaumatin family signature. 87 103 IPR017949 -
Cca05g00372 265 Pfam Thaumatin family 31 247 IPR001938 -
Cca05g00372 265 PRINTS Pathogenesis-related protein signature 26 38 IPR001938 -
Cca05g00372 265 PRINTS Pathogenesis-related protein signature 74 85 IPR001938 -
Cca05g00372 265 PRINTS Pathogenesis-related protein signature 126 142 IPR001938 -
Cca05g00372 265 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Cca05g00372 265 PANTHER BNAA02G17480D PROTEIN 9 256 - -
Cca05g00372 265 PANTHER OS03G0233200 PROTEIN 9 256 IPR001938 -
Cca05g00372 265 Gene3D Thaumatin 25 247 IPR037176 -
Cca05g00372 265 SUPERFAMILY Osmotin, thaumatin-like protein 25 248 IPR037176 -
Cca05g00372 265 SMART tha2 27 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00372 Cca-Chr5 8180855 8183166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00372 5 248 Receptor kinase-like Gene Family AT5G38280 55.061 2.31e-93 287
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00372 - - gmx:100787631 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00372 05 8180855 8183166 Cca05g00372 05 8180855 8183166 ECH