Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00347 atgtcagcaggtagtcttcaccgccaccgtgatccgtcgcgccacgcgcaccgccaccgtgcaccaccaccacgcactgccacTGTGCAGGTGCTTGAAGTCGCAACAGGAAATAAATCACTGCATGATAGTGCCCATGAGAACTTCTTTTCTCAGTGGCAAGCATTTTGGGTGATTTGGAATATCAGCGTCAAACTTACTGCTCCTACGGTTGCAGCACAAAAATGGGTAGTAGTGATAGTAGATTTTGAAATTGAGCATGCGCAGAAACCCCAAAAGAACATGCAGAGATTTTCAGCGCTTTTCTTCAGAAAACGTGGTGTTTCTCCCCTTTTATCGAGAAAATCACTAGTAATCAGACACAAAAACACCATATGCCATTTTTTCTCCACTACCTCCGATGCAAGTTCTCAAACCTCTTCCCAGTGCCCACCAAATTCCAATTCTAAATGCTCAACATTTGCCAATAGCAACATCAACAATAGCATAGCAAGCCAATTTGGCCTGATTCACCTAGAAGAGATTTCAATAAACCAGCCAAACGATCAATGCCATGACGAGTTTGCTTCTGATGTGGAAAAGGTTTATAGAATATTGAGAAAGTACCATTCTAGGGTTCCCAAATTGGAACTAGCTTTGAGAGAATCTGGGGTTTTTGTGAGGCCTGGATTAACCGAGCGTGTGTTGAATAGGTGTGGTGATGCCGGGAATTTGGCGTACAGGTTTTATGCCTGGGCCTCTAAGCAATCCGGTCATCAACATGATCAAGACGTGTATAAAGCAATGATTAAGGTTTTGGGTAGGATGCGGCAGTTTGGTGCTGTGTGGGCACTGATTGAGGAAATGAGGGAGGAGAACCCTCACTTGATTTCGCCGCAAGTTTTTGTTATTTTGATGAGGAGGTTTGCCTCGGCTAGGATGGTTCACAAGGCAATTGAGGTGTTGGATGAGATGCCCAAGTACGGGTGTGAGCCAGATGAATATGTTTTTGGATGTTTGTTGGATGCATTGTGCAAGAATGGAAGTGTTAAGGAAGCTGCTTCACTCTTTGAGGACATGAGGGAAGGGAAGCTTATGGAGGCTAAACATGTCCTTGTGCAGATGAAGGACGCGGGCATTGAACCGGATATTGTGGTTTTTAACAATTTGCTTGGTGGGTATGCACAGGCTGGGAAAATGGGGGATGCTTATGATCTTTTGAAAGAGATGAAGAGGAAGGGTTGTGAACCGAATGCAACATCCTACACGGTTTTGATCCAGTCGCTATGTAGACATGAGAGGTTGGAGGAGGCAACACGGGTGTTTCTTGAGATGCAGAGAAATGGTTGTCAGGTGGATGTTGTGACGTATTCCACTTTGATAAGTGGATTTTGCAAATGGGGAAAAATCAAAAGGGGTTATGAGCTTTTGGATGAGATGATACAACAAGGGCATTCCCCAAATCAGGTTATTTATCTGCATATCATGGTGGCTCATGAGAAGAAGGAAGAACTGGAAGAATGTATGGAACTGGTGAAAGAGATGCAGAAGATTGATTGTGCTCCTGATCTTAACATCTATAATACAGTCATTAGGTTGGCTTGCAAGTTGGGAGAGGTAAAGGAAGGTGTTCGGCTTTGGAATGAAATGGAATCAAGTGGGCTCAGTCCAGGAACTGACACCTTTGTCATCATGATTAATGGGTTTCTTGAGCAAGGCTGTCTAGTCGAAGCTTGCGAGTATTTCAAAGAGATGGTAGGGAGAGGGCTTTTTACTGCTCCGCAATATGGTACCTTGAAGGAGTTGATGAATTCTCTTCTAAGAGCTGAGAAGCTTGAAATGGCCAAAGATGTTTGGAATTGCATCACAGGTTCTATAGGGTGTCAGCTGAATGTGAGTGCATGGACAATCTGGATTCATGCTCTCTTTTCAAAAGGGCATGTGAAAGAGGCTTGTTCATTCTGTATAGACATGATGGATAAGGATTTAATGCCACAGCCAGATACTTTTGCAAAGCTTATGCGTGGTCTGAAGAAATTATATAATAAACACTTTGCAGAAGAGATCACGGAGAAGGTGAGGAAAATGGCAGCTGATAGGCAGATTACATTCAAGATGTATAAACGGAGAGGAGAGAGGGACTTGAAAGAAAAGGCAAAGGAGAAAAAGGATGGGAGGAAGAGGAGGGCTAGACAACGCCAATGGGGTGGTGTCCATCAGAAATTATAA 2208 0.4162 MSAGSLHRHRDPSRHAHRHRAPPPRTATVQVLEVATGNKSLHDSAHENFFSQWQAFWVIWNISVKLTAPTVAAQKWVVVIVDFEIEHAQKPQKNMQRFSALFFRKRGVSPLLSRKSLVIRHKNTICHFFSTTSDASSQTSSQCPPNSNSKCSTFANSNINNSIASQFGLIHLEEISINQPNDQCHDEFASDVEKVYRILRKYHSRVPKLELALRESGVFVRPGLTERVLNRCGDAGNLAYRFYAWASKQSGHQHDQDVYKAMIKVLGRMRQFGAVWALIEEMREENPHLISPQVFVILMRRFASARMVHKAIEVLDEMPKYGCEPDEYVFGCLLDALCKNGSVKEAASLFEDMREGKLMEAKHVLVQMKDAGIEPDIVVFNNLLGGYAQAGKMGDAYDLLKEMKRKGCEPNATSYTVLIQSLCRHERLEEATRVFLEMQRNGCQVDVVTYSTLISGFCKWGKIKRGYELLDEMIQQGHSPNQVIYLHIMVAHEKKEELEECMELVKEMQKIDCAPDLNIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPGTDTFVIMINGFLEQGCLVEACEYFKEMVGRGLFTAPQYGTLKELMNSLLRAEKLEMAKDVWNCITGSIGCQLNVSAWTIWIHALFSKGHVKEACSFCIDMMDKDLMPQPDTFAKLMRGLKKLYNKHFAEEITEKVRKMAADRQITFKMYKRRGERDLKEKAKEKKDGRKRRARQRQWGGVHQKL 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00347 735 Pfam PPR repeat 441 473 IPR002885 -
Cca05g00347 735 Pfam PPR repeat 322 354 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 519 551 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 378 412 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 328 356 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 448 481 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 258 285 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 295 327 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 554 583 IPR002885 -
Cca05g00347 735 TIGRFAM PPR: pentatricopeptide repeat domain 414 447 IPR002885 -
Cca05g00347 735 Gene3D Tetratricopeptide repeat domain 509 581 IPR011990 GO:0005515
Cca05g00347 735 Gene3D Tetratricopeptide repeat domain 225 357 IPR011990 GO:0005515
Cca05g00347 735 MobiDBLite consensus disorder prediction 715 735 - -
Cca05g00347 735 Pfam PPR repeat 483 513 IPR002885 -
Cca05g00347 735 Pfam PPR repeat 258 286 IPR002885 -
Cca05g00347 735 Pfam PPR repeat 627 655 IPR002885 -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 480 IPR002885 -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 411 445 IPR002885 -
Cca05g00347 735 Gene3D Tetratricopeptide repeat domain 584 734 IPR011990 GO:0005515
Cca05g00347 735 Gene3D Tetratricopeptide repeat domain 358 508 IPR011990 GO:0005515
Cca05g00347 735 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 130 732 - -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 376 410 IPR002885 -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 624 658 IPR002885 -
Cca05g00347 735 MobiDBLite consensus disorder prediction 706 735 - -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Cca05g00347 735 MobiDBLite consensus disorder prediction 1 26 - -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Cca05g00347 735 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 130 732 - -
Cca05g00347 735 Pfam PPR repeat family 515 562 IPR002885 -
Cca05g00347 735 Pfam PPR repeat family 375 424 IPR002885 -
Cca05g00347 735 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Cca05g00347 735 Coils Coil 491 511 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00347 356 695 Glycosyltransferase AT1G05670 26.686 1.89e-29 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00347 - - var:108334446 1107.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00347 05 7583585 7592959 Cca05g00347 05 7583585 7592959 ECH