Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00327 ATGGCTCCCAATTCCAACCACTCCCACCCAATCCATTCCCCAACTCTCCCCCCTTTGACTTCCCCATGCCTAGCTACTCcctcctcgccctcctcctcctcGCCGCCGTGGCAGCCGATCCGCCAGGTGGTGCCGGGCGCAGAGCCCGAGGAGGATCACCTGCTGAACGCGGAGCATCACTTCTCAACCTTCAAGGCGAGGTTCGGTAAGAGCTACGCGACGAAGGAGGAGCACGACCATCGCTTCGGCGTCTTCGAGTCGAACCTTCGCAGAGCGAGGCTTCACGCGAAACTCGACCCCTCCGCCGTCCACGGCGTCACGAAATTCTCCGATCTGACTCCGGCGGAGTTCAGGCGGCAGTTCCTCGGCCTGAAGCCTCTCCGCCTCCCGGCGCATGCGCAGAATGCCCCTGTACTCCCTACCAAGGATCTCCCCAAGGATTTCGATTGGCGTGACAAAGGTGCCGTTACCAACGTCAAGGACCAGGGTTCGTGCGGTTCGTGTTGGTCTTTCAGTACTACGGGAGCGTTGGAAGGTGCTCATTACCTTGCCACCGGCGAACTCCTTAGTTTTAGTGAGCAACAGCTTGTGGATTGTGATCATGTGTGTGACCCAGAAGAATATGGAGCGTGTGACGCAGGCTGCAATGGTGGGTTGATGAACAACGCATTTGAGTACATACTTGAGTCTGGTGGAATACAGCTAGAAAAAGACTATCCATACACAGGAAGAGATGGCACCTGCAAATTTGACAAAAGCAAGGTTGTGGCTACTGTATCTAATTACAGTGTGGTTTCCCTTGATGAAGATCAAATTGCTGCAAACCTAGTGAAGAATGGCCCTCTCGCAGTTGGTATCAATGCAGTTTATATGCAGACATATATAGGTGGCGTCTCTTGCCCATACATCTGCGGGAAGAATTTGGATCATGGGGTTCTTCTAGTGGGTTATGGCGAAGGTGCATATGCTCCCATTCGTTTCAAGGAAAAGCCTTACTGGATCCTTAAGAATTCATGGGGTGAGAACTGGGGAGAGAATGGATATTACAAGATCTGCCGAGGCCGAAATGTATGTGGAGTGGATTCTATGGTCTCAACTGTAGCAGCTATACATCTATAA 1119 0.513 MAPNSNHSHPIHSPTLPPLTSPCLATPSSPSSSSPPWQPIRQVVPGAEPEEDHLLNAEHHFSTFKARFGKSYATKEEHDHRFGVFESNLRRARLHAKLDPSAVHGVTKFSDLTPAEFRRQFLGLKPLRLPAHAQNAPVLPTKDLPKDFDWRDKGAVTNVKDQGSCGSCWSFSTTGALEGAHYLATGELLSFSEQQLVDCDHVCDPEEYGACDAGCNGGLMNNAFEYILESGGIQLEKDYPYTGRDGTCKFDKSKVVATVSNYSVVSLDEDQIAANLVKNGPLAVGINAVYMQTYIGGVSCPYICGKNLDHGVLLVGYGEGAYAPIRFKEKPYWILKNSWGENWGENGYYKICRGRNVCGVDSMVSTVAAIHL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00327 372 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 162 173 IPR000169 -
Cca05g00327 372 MobiDBLite consensus disorder prediction 25 39 - -
Cca05g00327 372 Gene3D Cysteine proteinases 43 368 - -
Cca05g00327 372 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 41 368 - -
Cca05g00327 372 MobiDBLite consensus disorder prediction 1 42 - -
Cca05g00327 372 PRINTS Papain cysteine protease (C1) family signature 332 338 IPR000668 GO:0006508|GO:0008234
Cca05g00327 372 PRINTS Papain cysteine protease (C1) family signature 162 177 IPR000668 GO:0006508|GO:0008234
Cca05g00327 372 PRINTS Papain cysteine protease (C1) family signature 310 320 IPR000668 GO:0006508|GO:0008234
Cca05g00327 372 SMART Inhibitor_I29_2 61 117 IPR013201 -
Cca05g00327 372 PANTHER CYSTEINE PROTEASE RD19C-RELATED 41 368 - -
Cca05g00327 372 Pfam Cathepsin propeptide inhibitor domain (I29) 61 117 IPR013201 -
Cca05g00327 372 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 332 351 IPR025661 -
Cca05g00327 372 SUPERFAMILY Cysteine proteinases 57 366 IPR038765 -
Cca05g00327 372 CDD Peptidase_C1A 145 367 IPR039417 -
Cca05g00327 372 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 308 318 IPR025660 -
Cca05g00327 372 Pfam Papain family cysteine protease 144 366 IPR000668 GO:0006508|GO:0008234
Cca05g00327 372 SMART pept_c1 144 368 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00327 Cca-Chr5 6934000 6936971 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00327 K01373 - gmx:100791503 647.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00327 05 6934000 6936971 Cca05g00327 05 6934000 6936971 ECH