Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00198 ATGGAGAGAACACAGTCATCCATTGAACAAATTCAGCCTCCAACATATGGAAACTTAGTAACCATTCTTAGCATTGATGGTGGTGGTATTAGGGGCATCATCCCTGCTACCATTATTGCCTTCCTTGAATCTCAGCTTCAGGAGTTGGATGGTCCAGATGCAAGGCTAGCAGACTACTTTGACGTGATATCAGGAACAAGCACGGGTGGTCTCGTAACCGCTATGTTAACTGCTCCAGATAGCAACAATAGACCACTTTTCTCTGCCAAAGATATCAAACCCTTTTACATGGAACACTCTCACAAAATCTTCCCACAACATAGTGGTCTCGGTGGGACGATAATAGCCAAGTTAATAAGATCTCTGGGAGGACCCAAATACGATGGTAAATATCTTCATGCAGTCATCGCAGAAAAACTTGGAGACATTCGGTTGCATGAGACACTCACCAACGTTGTCATTCCCACCTTCGACATCAAGTGTTTGCAACCAATTATTTTCTCATCTTACCAGGTTAAGATGTCCACTGGCTTGGATGCCAAACTCTCAGACATATGTATCAGCACGTCCGCTGCACCAACTTATCTCCCTGCTCACAATTTCAGCAACCAAGATTCAAATGGGAAAGTTCACGAATTCAACCTTATTGATGGTGGCGTTTGTGCAAATAACCCCACCTTGGTTGCGATGAACGAAGTAACAAAGCAAATCATTAAGGAAAATTCTGATTTCTTTCCAATCAAGCCTATGGAATATGGTCGGTTCCTAATAATTTCAATAGGCACTGGAACAGCAAAAAATGAGGAAAAATTCAATGCACCAATGGCAGCGAAATGGGGATTATTGGATTGGCTAACTCATAGTGGTACTACTCCCTTAATTGATGTTTTCACTCAATCCAGTGCAGATATGGTTGATTTCCATTTATCTGCTGTCACTCAAGCACTTCATTCAGAAGACAATTACCTTCGAATACAGGATGACACGTTGACTGGAACGGATTCTTCTGTTGACATTGCTACAAAGGAGAACTTGGAGAAACTTTGCCAAATTGGAGAAAATCTGTTAAAGAAACCAGTCTCTAGGGTCAATTTAGAGAATGGTCTCTCTGAGCCACTCAAAAATGGGGGAACCAATGAAGATGCTCTCAAAAGGTTTGCAAAAATACTTTCACAAGAGAGGAGACTCCGTGAAATGAGATCCCCACACACTAAAAAGCTCTTGCAGACGCGTTCGATTAAATTAGCTTCGGTGATTTAA 1260 0.4183 MERTQSSIEQIQPPTYGNLVTILSIDGGGIRGIIPATIIAFLESQLQELDGPDARLADYFDVISGTSTGGLVTAMLTAPDSNNRPLFSAKDIKPFYMEHSHKIFPQHSGLGGTIIAKLIRSLGGPKYDGKYLHAVIAEKLGDIRLHETLTNVVIPTFDIKCLQPIIFSSYQVKMSTGLDAKLSDICISTSAAPTYLPAHNFSNQDSNGKVHEFNLIDGGVCANNPTLVAMNEVTKQIIKENSDFFPIKPMEYGRFLIISIGTGTAKNEEKFNAPMAAKWGLLDWLTHSGTTPLIDVFTQSSADMVDFHLSAVTQALHSEDNYLRIQDDTLTGTDSSVDIATKENLEKLCQIGENLLKKPVSRVNLENGLSEPLKNGGTNEDALKRFAKILSQERRLREMRSPHTKKLLQTRSIKLASVI 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00198 419 Gene3D Cytosolic phospholipase A2 catalytic domain 9 402 - -
Cca05g00198 419 Pfam Patatin-like phospholipase 23 230 IPR002641 GO:0006629
Cca05g00198 419 PANTHER XYLOSE ISOMERASE 1 406 - -
Cca05g00198 419 SUPERFAMILY FabD/lysophospholipase-like 18 381 IPR016035 -
Cca05g00198 419 CDD Pat17_isozyme_like 17 368 - -
Cca05g00198 419 ProSiteProfiles Patatin-like phospholipase (PNPLA) domain profile. 23 230 IPR002641 GO:0006629
Cca05g00198 419 PANTHER PATATIN 1 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00198 Cca-Chr5 4291590 4294203 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00198 11 405 Miscellaneous Gene Families AT2G26560 66.076 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00198 - - gmx:100798783 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00198 05 4291590 4294203 Cca05g00198 05 4291590 4294203 ECH