Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00194 ATGTCCGGCATGGAGAGGCTGCAGAGGATGTTCGCGGGTGCAGGGGGAGCCCTGGGCCACCCCCCACCCGATTCCCCCACCCTCGATTCCTCCGAGCAGGTTTACATCTCCTCCCTCGCGCTTCTCAAAATGCTCAAACACGGGAGGGCTGGTGTGCCCATGGAAGTGATGGGTTTGATGTTGGGCGAGTTCGTGGACGAGTACACTGTTCGCGTTGTGGATGTGTTCGCGATGCCTCAGAGTGGGACCGGTGTTAGCGTTGAAGCCGTTGATCATGTTTTTCAGACTAATATGCTCGATATGTTGAAGCAGACTGGAAGGCCGGAGATGGTTGTGGGGTGGTATCACTCTCATCCTGGATTTGGGTGTTGGCTTTCTGGAGTGGATATTAATACACAACAGAGTTTTGAGGCTTTAAACCAACGGGCAGTGGCTGTGGTGGTAGATCCTATTCAGAGTGTTAAAGGCAAAGTGGTGATTGATGCTTTCCGGCTGATTAATCCACAAACTATGATGCTGGGTCAGGAACCACGACAGACAACTTCCAACCTGGGTCATCTAAACAAGCCATCTATCCAAGCTCTGATCCATGGCTTGAATAGACATTATTACTCCATAGCAATTAATTACAGAAAGAATGAGCTTGAAGAGAAGATGTTGCTTAACCTTCATAAGAAGAAATGGACTGATGGTTTGACACTCAGGCATTTTGATTCACATTCTAAAACTAATGAACAGACTGTTCAGGAGATGCTAAATTTAGCAGCAAAGTACAACAAGGCAGTGCAGGAGGAAGACGAGCTGCCACCAGAAAAACTTGCAATTGCAAATGTGGGAAGGCAAGATGCTAAGAAGCACCTTGAAGAGCATGTTTCCAATTTGATGTCTTCAAACATTGTTCAGACTTTGGGAATGATGCTCGACACAGTTGTTTTCTAG 939 0.4728 MSGMERLQRMFAGAGGALGHPPPDSPTLDSSEQVYISSLALLKMLKHGRAGVPMEVMGLMLGEFVDEYTVRVVDVFAMPQSGTGVSVEAVDHVFQTNMLDMLKQTGRPEMVVGWYHSHPGFGCWLSGVDINTQQSFEALNQRAVAVVVDPIQSVKGKVVIDAFRLINPQTMMLGQEPRQTTSNLGHLNKPSIQALIHGLNRHYYSIAINYRKNELEEKMLLNLHKKKWTDGLTLRHFDSHSKTNEQTVQEMLNLAAKYNKAVQEEDELPPEKLAIANVGRQDAKKHLEEHVSNLMSSNIVQTLGMMLDTVVF 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00194 312 ProSiteProfiles MPN domain profile. 34 169 IPR037518 -
Cca05g00194 312 SMART pad1_6 33 168 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca05g00194 312 Pfam Maintenance of mitochondrial structure and function 176 299 IPR024969 -
Cca05g00194 312 Gene3D Cytidine Deaminase, domain 2 20 237 - -
Cca05g00194 312 Pfam JAB1/Mov34/MPN/PAD-1 ubiquitin protease 30 141 IPR000555 GO:0005515|GO:0008233|GO:0008237
Cca05g00194 312 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 14 HOMOLOG 3 312 IPR035299 GO:0008237|GO:0061578
Cca05g00194 312 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED 3 312 - -
Cca05g00194 312 CDD MPN_RPN11_CSN5 23 289 - -
Cca05g00194 312 SUPERFAMILY JAB1/MPN domain 34 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00194 Cca-Chr5 4265202 4271852 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00194 K03030 - gmx:100778174 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00194 05 4265202 4271852 Cca05g00194 05 4265202 4271852 ECH