Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca05g00178 | ATGGAGGATGCTGAAGACAAGCCATCCTCAGAATCAGAAACCTCTTCAACAAGTGCTGAACTGAGGCCACAAGCAGAAACCCCTGAAGAGAATACTGCTATGATAAATCCACCCGATAGCCAGTCTTCCATTGAAGCTGCCACCAATCAACTCAGTAATAATAGTAGAGTGGAACCTGGCACTCATTTTCCAGGAACTAAGTTCTCAGACTTAGAAGAGTCCCTAAAAGCTTCTGATGGTCAAACTGTAGGACAGGATGAATATCATCACACTGATAATGATAATCCATCTTCTACTCCTAAAGCCACAATTCATGATACAGAACAAAGCCACCACATGGTATCACATCCCGAATCAGGAGCTTTAGAAGATGTCTTTAACAGGCAGCAGGATGGTGTTTCTACCACCACTGGTACCGATGATGTTGATAATTCAATGAATCTCTCACCTTCCTCTTCTGAAACAACAGAGTTGCAGACTAATCCCACAGAACGAATAACAGACCCACCTCAAACCAAGGTTAATGATGTTCATGTTCCCATAGATAATTCAGCTTCAACACCAAATGTTAGTGTTCATGTAATAGAACAAAGCAACCAGGGAGGGATGTCTGCAGATTCTGAATCTCAAGCTTTAGAAGATATCTCAAACGGGCAGCAGGATGGTGGTTCTACTCTCAGTGCTGGAAGTAATGTTGGTAATCAGATGGAACTCTCAAATTCCCCTTCTGTGGAAAAAGAGTTGCAGAATGACCACAAAGAACTAATGAAAAAACCAATAATTGATCCATCTCAAACCACGGATACTGATGCTGCAGAGCTAGCTGTTGGTTCACCTGCTGGCAAGGATGATGATAATCAGATAGAACTCTTGGCTTCCTCTTCTGAAAAGACGGATTTGCCAAGTGATCACAAAGAACTTAAGATAGAACTGCCTCAAACGGAAATTGATGATGTGTCTGTCGAAGCTGTTGACTTACCTTCTGTCAGTGATGATAATCAGATAAAACTATTGGCGTCCTCTTCTGAAAATGTAGAGTTCCAGAATGACCAGAAAGAACTAACGACAGATCCGTCTCGCAATATTAATGATGTTGTTGTGGGAGCTGTTGACTCACCTACTTATGCCAAGCAGATTGCTGAAAAAAGAGGCCTTATTGATACAGCAGCTCCATTTGAATCTGTCAAGGAAGCTGTTTCCAAGTTTGGAGGCATTGTGGACTGGAAGGCTCATAGAATCCAGACCGTGGAGAGACGCAAGCATGTAGAACTTGAACTTGATAAGGCACAGCAGGAGATCCCGGTGTACCAAAAAAAATCACAAGCTGCTGAGCAAGCAAAAATGCAAGTACTGTTAGAGCTGGATAGCACAAAGAGACTAATAGAAGAACTAAAACTTAACCTAGAGAGGGCACAAACAGAAGAGCGTCAAGCAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACAAACAGAGGAGCGTCAAGCAAGACAGGACTCAGAACTTGCAAAGCTGAGAGTGGAAGAGATGGAGCAAGGTATTGCTGATGACTCCAGCATTGCTGCCAAGGCACAGCTTGAGGTAGCTAAAGCCAGGTATTCATCTGCTATCACGGAGTTAACATCTGTTAAAGAGGAGCTGGATGCATTGCGTGTGGAATATGCATCCTTAGTTGATGAAAAAGATGAAGCTGTTAAGAAAGCTGAAGAGGCTGTTGCTTCATCAAAGCAAGTAGAGAAGACAGTGGAAGACTTGACTATTGAGCTCATTGCCACAAAGGAGGCACTGGAATCTGCTCATGCTGCACACATGGAAGCAGAGGAACACAGAATAGGGATAGTCATGGCAAGAGATCAAGATTCTCTCAATTGGGACAAAGAACTTAAACAGGCAGAAGAAGAACTTCAGAGACTCAACCAGAAGATTTTGTCTGCTAATGATCTCAAATCTAAACTCAACACAGCCTCGGCTTTGCTGCTTGATTTGAAAGCCGAGTTAAATGTTTATATGGAATCATCTAAGTCTAAGCATGAAGGTGATGAAGGAGAGTTAGAGGAGCCAGAGAAGAAGACTCACAGTGAAATACAAGAAGCAGTTGCATCAGCCAAAAAGGAGCTTGAGGAAGTAAAGCTTAACATAGAGAAAGCCACCACTGAGGTAAATTACCTAAAGGTGGCTGCAGCATCATTGAAATCAGAACTTGAAAATGAGAAATCATCTCTTGCATCGATTCGACAAAGAGAGGGAATGGCCTCCGTTACGGTTTCATCTCTTGAATCTGATCTACACAACACTAGATCAGAAATGGCTTTGGTTCAGATGAGGGAGAAAGAAGGCAGAGAGAGGATTCAGGAGCTTCCAAAGAAACTACAGCAAGCAGTTGAAGAGGCTAATCAGGCCAACTTGTTTGCTCAAGCAGCTCGCGAAGAGTTGAGGAGAGTGAAGGAGGAGGCAGAACAAGCCGAGGCTTGTGCAAGTACAATGCAAAGTAAATTACTTGCAGCACAAAAAGAGATAGAGGCTGCAAGGGCCTCTGAAATGTTGGCAATAGCAGCAACTAAAGCATTGAATGAGTCATCTAGGAACAACAACAATGAAGCAGTGGATTCATCCTCTTGGGTGTCGGTTTCGGTGGAGGAGTACTATAATCTCAGCAAACAAGCACATGAAGCAGAAGATCAAGCCAACATTAGGGTTGCAGCTGCTAATTCTGAAATCAAGATAGCTAAGGAGTCTGAATTGAAAACCTTGCAGAAGTTGAATGATGTGACTAGAGAGATGGCTGCTAGAAGGGAGTCTCTGAAGATTGCAATGGAGAAAGCCGAAAAGGCAAGGGAAGGAAAATTAGGTGTAGAACAAGAATTGAGAAAATGGAGGGCTGAACATGAGCAAAGAAGAAAAGCTGGTGGATTGGGCCAAGGAGAAGTAACGCAAAGTAGAAGTACCAAGATATCTGAACATCTCATCCTTTTGGAGGTTATTCAAAGTTATACCATACTTGTACATGTTAGTCATTGCTGTGTGTATGATAATGGTTCATTGCATTATACTCCATCTCACTGA | 3171 | 0.4087 | MEDAEDKPSSESETSSTSAELRPQAETPEENTAMINPPDSQSSIEAATNQLSNNSRVEPGTHFPGTKFSDLEESLKASDGQTVGQDEYHHTDNDNPSSTPKATIHDTEQSHHMVSHPESGALEDVFNRQQDGVSTTTGTDDVDNSMNLSPSSSETTELQTNPTERITDPPQTKVNDVHVPIDNSASTPNVSVHVIEQSNQGGMSADSESQALEDISNGQQDGGSTLSAGSNVGNQMELSNSPSVEKELQNDHKELMKKPIIDPSQTTDTDAAELAVGSPAGKDDDNQIELLASSSEKTDLPSDHKELKIELPQTEIDDVSVEAVDLPSVSDDNQIKLLASSSENVEFQNDQKELTTDPSRNINDVVVGAVDSPTYAKQIAEKRGLIDTAAPFESVKEAVSKFGGIVDWKAHRIQTVERRKHVELELDKAQQEIPVYQKKSQAAEQAKMQVLLELDSTKRLIEELKLNLERAQTEERQAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQTEERQARQDSELAKLRVEEMEQGIADDSSIAAKAQLEVAKARYSSAITELTSVKEELDALRVEYASLVDEKDEAVKKAEEAVASSKQVEKTVEDLTIELIATKEALESAHAAHMEAEEHRIGIVMARDQDSLNWDKELKQAEEELQRLNQKILSANDLKSKLNTASALLLDLKAELNVYMESSKSKHEGDEGELEEPEKKTHSEIQEAVASAKKELEEVKLNIEKATTEVNYLKVAAASLKSELENEKSSLASIRQREGMASVTVSSLESDLHNTRSEMALVQMREKEGRERIQELPKKLQQAVEEANQANLFAQAAREELRRVKEEAEQAEACASTMQSKLLAAQKEIEAARASEMLAIAATKALNESSRNNNNEAVDSSSWVSVSVEEYYNLSKQAHEAEDQANIRVAAANSEIKIAKESELKTLQKLNDVTREMAARRESLKIAMEKAEKAREGKLGVEQELRKWRAEHEQRRKAGGLGQGEVTQSRSTKISEHLILLEVIQSYTILVHVSHCCVYDNGSLHYTPSH | 1056 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca05g00178 | 1056 | Coils | Coil | 728 | 755 | - | - | |
| Cca05g00178 | 1056 | MobiDBLite | consensus disorder prediction | 177 | 245 | - | - | |
| Cca05g00178 | 1056 | MobiDBLite | consensus disorder prediction | 1 | 286 | - | - | |
| Cca05g00178 | 1056 | PANTHER | HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED | 24 | 479 | - | - | |
| Cca05g00178 | 1056 | PANTHER | WEB FAMILY PROTEIN-RELATED | 24 | 479 | - | - | |
| Cca05g00178 | 1056 | Pfam | Weak chloroplast movement under blue light | 525 | 1001 | IPR008545 | - | |
| Cca05g00178 | 1056 | Pfam | Weak chloroplast movement under blue light | 383 | 479 | IPR008545 | - | |
| Cca05g00178 | 1056 | Coils | Coil | 826 | 867 | - | - | |
| Cca05g00178 | 1056 | Coils | Coil | 412 | 478 | - | - | |
| Cca05g00178 | 1056 | Coils | Coil | 526 | 544 | - | - | |
| Cca05g00178 | 1056 | Coils | Coil | 763 | 783 | - | - | |
| Cca05g00178 | 1056 | Coils | Coil | 960 | 980 | - | - | |
| Cca05g00178 | 1056 | MobiDBLite | consensus disorder prediction | 128 | 170 | - | - | |
| Cca05g00178 | 1056 | Coils | Coil | 569 | 603 | - | - | |
| Cca05g00178 | 1056 | Coils | Coil | 657 | 701 | - | - | |
| Cca05g00178 | 1056 | MobiDBLite | consensus disorder prediction | 11 | 60 | - | - | |
| Cca05g00178 | 1056 | PANTHER | WEB FAMILY PROTEIN-RELATED | 525 | 1017 | - | - | |
| Cca05g00178 | 1056 | PANTHER | HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED | 525 | 1017 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca05g00178 | Cca-Chr5 | 4028125 | 4032948 | Dispersed/Wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca05g00178 | - | - | ccaj:109812323 | 1170.99 |
Event-related genes
| Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
|---|---|---|---|---|---|---|---|---|---|
| Cca05g00178 | 05 | 4028125 | 4032948 | Cca05g00178 | 05 | 4028125 | 4032948 | ECH | |
| Cca05g00178 | 05 | 4028125 | 4032948 | Cca07g00442 | 07 | 5858061 | 5864198 | PCT |