Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00133 ATGGCTGCTAGGCACATTCTGCTTCACCGCCTTCGGTGGCGTAGCTTCCAAGGGTCCACCGCGGCGGCACCTCAGAGCCACCGTCTATGGTGCAGTGCCACGTCATCACCGGAAGAACCAAACTCGAACGCAAGTTGCGGGACCCACACCTGCAGCCAGGAATACCTCGAGTGGAAGGAGAAAGAAGAGAAGATCGTGAGGGACATTCAACCAATCGTTTCGCTAACCAGGAACATTCTCTACTCGCCAAGGTACATGAACGGGGAGCATTTGAGTATGGAGGACGAAAGAGCCGTGGTGGAGAACGTTCTCATTTACCATCCGCATTATGAAGATAAAATCGGAAGTGGCTTGAACTCCATTATGGTTGATCATCATCCCTTATATTTATACCCAAGGTGCCTTTTTGTTGTAAGAACTGATGGTAGCTGGATCGACTTCTCCTATCGGGTGTGCCTTGAGGAATACATTAAAAATAAGTACCAAATAAGTGCTGAAAGGTTTGTTAATAAAAGGTTTCTTAAAAATCTTATTAAGCATTGGGGTATTTGA 552 0.4674 MAARHILLHRLRWRSFQGSTAAAPQSHRLWCSATSSPEEPNSNASCGTHTCSQEYLEWKEKEEKIVRDIQPIVSLTRNILYSPRYMNGEHLSMEDERAVVENVLIYHPHYEDKIGSGLNSIMVDHHPLYLYPRCLFVVRTDGSWIDFSYRVCLEEYIKNKYQISAERFVNKRFLKNLIKHWGI 183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00133 183 Pfam Protein of unknown function (DUF3223) 78 153 - -
Cca05g00133 183 Gene3D - 60 179 - -
Cca05g00133 183 PANTHER - 8 175 IPR044673 -
Cca05g00133 183 PANTHER DCL PROTEIN (DUF3223) 8 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00133 Cca-Chr5 3160193 3166057 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00133 - - gmx:100792225 296.975
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00133 05 3160193 3166057 Cca05g00133 05 3160193 3166057 ECH
Cca05g00133 05 3160193 3166057 Cca07g00479 07 6468312 6474793 PCT