Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00127 ATGAATAGCGGAGAGGAAAATAGGAAAGCCAAGAAAGCAAAGGTGAGCGACGACTCAGAGCGTGAGAAGAGCGTGTACCTTGACGACAACGTTTTGTTTGAGGTGCTGAAGCACGTGGACTCGCGGTCGTTGGCTGTGGCTGGCTGCGTGAGCAAGCAGTGGAACAAAACCGCGCAGGACGAGAGGCTGTGGGAGCTGATATGCACAAGGCAGTGGGCAAACACCGGGTGCGGGGAGCAACAGCTAAGATCTGTGGTCCTCGCTCTCGGAGGCTTCCGTCGCCTCTACGCGCTCTACCTCTGGCCACTCTCCAAGCCCCACGCGCCTTCCACCTCTTGGCCCGCAATCCCGCACGTGCTCAGGTCCAAACCACGTTGGGGCAAAGACGAGGTTCATCTCTCCCTCTCCCTCCTCTCCATTCGATTCTACGAGAAGATGAATTCTCGTAAAGCCAAAAACACATGA 465 0.5634 MNSGEENRKAKKAKVSDDSEREKSVYLDDNVLFEVLKHVDSRSLAVAGCVSKQWNKTAQDERLWELICTRQWANTGCGEQQLRSVVLALGGFRRLYALYLWPLSKPHAPSTSWPAIPHVLRSKPRWGKDEVHLSLSLLSIRFYEKMNSRKAKNT 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00127 154 Pfam F-box domain 28 65 IPR001810 GO:0005515
Cca05g00127 154 PANTHER F-BOX PROTEIN GID2-LIKE 3 151 - -
Cca05g00127 154 MobiDBLite consensus disorder prediction 1 20 - -
Cca05g00127 154 Gene3D - 10 120 - -
Cca05g00127 154 PANTHER F-BOX ONLY PROTEIN 48-RELATED 3 151 IPR045118 GO:0019005|GO:0031146
Cca05g00127 154 SUPERFAMILY F-box domain 26 73 IPR036047 GO:0005515
Cca05g00127 154 SMART fbox_2 27 67 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00127 Cca-Chr5 2899649 2900985 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00127 K14495 - gmx:100802513 250.751
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00127 05 2899649 2900985 Cca05g00127 05 2899649 2900985 ECH