Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00116 ATGAGTAGTAGTAGTGGAAATGGTAGGGCATGGGATGACATGGGTGAAGTTTTCCTCTTTGGAACTCTCTCGAATTCAATAGAAAAAGAGGATGGTTCCACCAAAGGAGACGATGGTCGCTTGTACATTGTGTTGCCTTTGACTCAGTGTAGTGTGTATGATCTGAAGGGGAAGATTCTTGCGTTGGCGAAGGATCAAGTAGGGTGTCGGTTTTTGCAAGAGAGGATGAGGAGTTTGGCTTCGCCAGAAGAGGTTTCTTTCGTGTTTTTGGAGTTGATAGGTAATGTGGTTGAGTTGATGCTGGACCCGTCGGGGAACTATGTTTTTCAGAAGCTAGTGGAAATCTGCTGCGAGGAACAGAGGACCAGCATCATTTTGATGGTCACAAAGCCTAATTTTCAGCTTGTTAATATAAGTCTTGATTCTCATGGGACCCGGGCTGTTCAGAAATTGTTGGAATATGTCACTACCCAGGAACAGCGAAACCTTATTATGCTAGCGCTGTGCCCCGGCATTGTTGCATTGACTAAGGATTCCAATGGTCTTCATGTGATTGAGCATTGTCTAAAACTTTTTTCAAATGAAGACAACAAGTATATTCTAGATATCGTGGCAAACAACTGTTTTGACATAGCAACGGACAGGAGTGGGTGCTGTGTAATGCAGTATTGTGTTGACCATGCTCAGGGTGAAACCAAAGAGCGGCTGTGA 711 0.4416 MSSSSGNGRAWDDMGEVFLFGTLSNSIEKEDGSTKGDDGRLYIVLPLTQCSVYDLKGKILALAKDQVGCRFLQERMRSLASPEEVSFVFLELIGNVVELMLDPSGNYVFQKLVEICCEEQRTSIILMVTKPNFQLVNISLDSHGTRAVQKLLEYVTTQEQRNLIMLALCPGIVALTKDSNGLHVIEHCLKLFSNEDNKYILDIVANNCFDIATDRSGCCVMQYCVDHAQGETKERL 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00116 236 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 48 236 - -
Cca05g00116 236 SUPERFAMILY ARM repeat 54 235 IPR016024 -
Cca05g00116 236 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 22 236 IPR033133 GO:0003723
Cca05g00116 236 ProSiteProfiles Pumilio RNA-binding repeat profile. 127 165 IPR001313 GO:0003723
Cca05g00116 236 ProSiteProfiles Pumilio RNA-binding repeat profile. 202 236 IPR001313 GO:0003723
Cca05g00116 236 PANTHER PUMILIO HOMOLOG 15 48 236 - -
Cca05g00116 236 Pfam Pumilio-family RNA binding repeat 95 125 IPR001313 GO:0003723
Cca05g00116 236 Pfam Pumilio-family RNA binding repeat 207 236 IPR001313 GO:0003723
Cca05g00116 236 Pfam Pumilio-family RNA binding repeat 59 93 IPR001313 GO:0003723
Cca05g00116 236 Pfam Pumilio-family RNA binding repeat 172 202 IPR001313 GO:0003723
Cca05g00116 236 Pfam Pumilio-family RNA binding repeat 134 167 IPR001313 GO:0003723
Cca05g00116 236 ProSiteProfiles Pumilio RNA-binding repeat profile. 91 126 IPR001313 GO:0003723
Cca05g00116 236 Gene3D - 46 236 IPR011989 -
Cca05g00116 236 SMART pum_5 203 236 IPR001313 GO:0003723
Cca05g00116 236 SMART pum_5 167 202 IPR001313 GO:0003723
Cca05g00116 236 SMART pum_5 54 90 IPR001313 GO:0003723
Cca05g00116 236 SMART pum_5 130 166 IPR001313 GO:0003723
Cca05g00116 236 SMART pum_5 91 126 IPR001313 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00116 Cca-Chr5 2676012 2686784 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00116 - - ccaj:109791531 325.479
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00116 05 2676012 2686784 Cca05g00116 05 2676012 2686784 ECH