Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00109 ATGGCGTCGAGTTTTGACCGGTGGGAAAAAGATCCTTTCTTTAACGCTGCCGAAGAAGTTCAGGAATCTGCGGATAGGATGGAATCTACGTATAGGACATGGATACACGCAACAAAAGATGCATCTAGCATGTGGAACTCTGATGAATTGTGCAGAGATCTACGTACTGCACTTGGCACTGCCAAATGGCAGTTAGAGGAATTTGAACGGGCGGTGAAGTCAAGTTATAGCAAAAGCTCAAGCGAGGAAGCGAGAAATAGGCACCGAGATTTTATCACTGCCATTGAGGATAAGATAATGAAAGTTGAGCATTTGTTGAATGGATCAGTTGTTCCAGGAGACAAGGCATCTCTGCCTTGGTTGCGTTTAGATGAAGGAGAACAGAATGAGCTTGCTTTGTTTCTTTCAGGAACGCCAGCATCTGGAAGTAATGATCCCACTTGGTCTAACTTAAGGGACATTGAAGATCCACTATTAAGTGATGTAGCTTTGGCCAGTAATTGTTCAAAGGATTTTCATGTTTCATCTGGATGGGGTGAACCAAAGGAGGAGATGTCAAATGGGCATCGCCGGACAGCCAGTGCTAGCGCTGGTATTGGTTTTTGGAAAATTTCGGTTCATGATGATGCACAGCAGTGGAGTTCCTCCAGCGGTTCTTCTGGTCCAATGCATAAGATACCCAGTTTATCAGGTTTTCTCAGTTCTGTGGAATCTGTCCCCAAGTTGAAGTGGCCTAGGAATGGTTATAGAAAGCTCAAAGCAGCAGATCATCGTGAAGAAGCTGACACTGCACTACTTCCAACAGCTGAACTGAATAGGGGAAACAATGCACGCTGTGAAAGAAGTAAAAGTGGCCTTGATAGTTCTGATGAATGCTATGACAAGCAACTCTATGGATGGTATGGTGCTATCCGGAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAGGCAGCCTGTTCGAATAGCTGTTTCGATTGTTGTTCTCCTTTCTTTTATTGCATTAATCGCATTTCACGCAATGTAG 1029 0.4402 MASSFDRWEKDPFFNAAEEVQESADRMESTYRTWIHATKDASSMWNSDELCRDLRTALGTAKWQLEEFERAVKSSYSKSSSEEARNRHRDFITAIEDKIMKVEHLLNGSVVPGDKASLPWLRLDEGEQNELALFLSGTPASGSNDPTWSNLRDIEDPLLSDVALASNCSKDFHVSSGWGEPKEEMSNGHRRTASASAGIGFWKISVHDDAQQWSSSSGSSGPMHKIPSLSGFLSSVESVPKLKWPRNGYRKLKAADHREEADTALLPTAELNRGNNARCERSKSGLDSSDECYDKQLYGWYGAIRRQLQRSQYQMQYRQPVRIAVSIVVLLSFIALIAFHAM 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00109 342 PANTHER EXPRESSED PROTEIN 1 341 - -
Cca05g00109 342 Gene3D - 9 109 - -
Cca05g00109 342 Pfam Syntaxin 6, N-terminal 11 102 IPR015260 GO:0016020|GO:0048193
Cca05g00109 342 PANTHER OS05G0443700 PROTEIN 1 341 - -
Cca05g00109 342 SUPERFAMILY t-snare proteins 10 106 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00109 Cca-Chr5 2578485 2581974 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00109 - - gmx:100800191 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00109 05 2578485 2581974 Cca05g00109 05 2578485 2581974 ECH