Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00067 ATGGATGCTTCCTCCTCCTCGTCCACTCAACCCGAATTCGATTACTTGTTCAAGCTTCTCTTGATTGGGGATTCTGGCGTCGGCAAAAGCACCCTGCTTTTGAGCTTCACCTCCGATACATTCGAGGATCTTTCTCCCACCATCGGTGTGGATTTCAAAGTTAAATATGTTACGATTGGAGGGAAAAAGTTAAAACTTGCTATTTGGGACACAGCTGGACAGGAAAGGTTTAGAACACTTACTAGTTCATACTATAGAGGAGCTCAAGGAATAATTATGGTATATGATGTGACACGGCGGGACACCTTCACAAACCTATCTGATATATGGGCTAAAGAAATTGACCTATACTCAACAAATCAAGATTGCATCAAGATGCTAGTTGGAAACAAGGTTGATAAGGAAAGTGAAAGGGTTGTCAGCAAAAAGGAAGGGATAGACTTTGCAAGGGAATATGGATGTTTGTTTACTGAATGCAGTGCAAAAACCAGAGTCAATGTTGGCCAGTGTTTTGATGAGCTTGTGATGAAGATTTTGGAGACACCAAGTCTCTTGGCTGAGGGCTCGTCTGGTGTGAAAAAGAACATCTTCAAGCAGAAAGCCCCACAGTCTGATGCATCAAGTAGTGGCTGCTGCTCATACTCATAG 648 0.429 MDASSSSSTQPEFDYLFKLLLIGDSGVGKSTLLLSFTSDTFEDLSPTIGVDFKVKYVTIGGKKLKLAIWDTAGQERFRTLTSSYYRGAQGIIMVYDVTRRDTFTNLSDIWAKEIDLYSTNQDCIKMLVGNKVDKESERVVSKKEGIDFAREYGCLFTECSAKTRVNVGQCFDELVMKILETPSLLAEGSSGVKKNIFKQKAPQSDASSSGCCSYS 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00067 215 SMART ran_sub_2 22 214 - -
Cca05g00067 215 ProSiteProfiles small GTPase Rho family profile. 10 179 - -
Cca05g00067 215 SMART ras_sub_4 14 181 - -
Cca05g00067 215 TIGRFAM small_GTP: small GTP-binding protein domain 15 173 IPR005225 GO:0005525
Cca05g00067 215 Gene3D - 10 212 IPR027417 -
Cca05g00067 215 ProSiteProfiles small GTPase Rab1 family profile. 12 212 - -
Cca05g00067 215 PANTHER LD21953P-RELATED 8 213 - -
Cca05g00067 215 SMART rho_sub_3 19 181 IPR001806 GO:0003924|GO:0005525
Cca05g00067 215 SMART rab_sub_5 17 181 - -
Cca05g00067 215 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 12 189 IPR027417 -
Cca05g00067 215 SMART arf_sub_2 1 182 - -
Cca05g00067 215 CDD Rab18 17 178 - -
Cca05g00067 215 ProSiteProfiles small GTPase Ras family profile. 6 215 IPR001806 GO:0003924|GO:0005525
Cca05g00067 215 PANTHER BNAA05G18680D PROTEIN 8 213 - -
Cca05g00067 215 Pfam Ras family 18 179 IPR001806 GO:0003924|GO:0005525
Cca05g00067 215 PRINTS Transforming protein P21 ras signature 17 38 - -
Cca05g00067 215 PRINTS Transforming protein P21 ras signature 39 55 - -
Cca05g00067 215 PRINTS Transforming protein P21 ras signature 57 79 - -
Cca05g00067 215 PRINTS Transforming protein P21 ras signature 121 134 - -
Cca05g00067 215 PRINTS Transforming protein P21 ras signature 156 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00067 Cca-Chr5 1451606 1458882 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00067 18 114 EF-hand Containing Proteins AT5G27540 24.742 5.00e-09 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00067 K07910 - gmx:100794330 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00067 05 1451606 1458882 Cca05g00067 05 1451606 1458882 ECH