Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00056 ATGGCCTTGGAGAATTGTGTGAGAGTTGCCACTGTAGGCACAGGTGCCAGACCCCAACAATGTCTTCTTCATCCATTCAGCAAAAGGGAGAAGCTTGTTTTTCCCACTTTCGGAGGATTCAAGAAATCTTTGTCAAAATCAACTTTATCAAACGCATCATCTCTTTATTCTGCTGCTGCTGGCAAGAACAGAAAATCTCGTTTTATCTGCAAAGCTCGTGAAGCGGTAAATGAAGTGCGGGTAGTGACAGATTCAAGCTGGAATAGCCTTGTCATTGAAAGTGAAACCCCGGTGCTGGTAGATTTTTGGGCACCATGGTGTGGACCATGCAGGATGATAGCCCCTATCATTGATGAGTTAGCAAAAGAGTATGCTGGAAAAATTGTATGTTACAAGCTTAACACAGATGACTGTCCCAACATAGCCACACAGTACGGAATCAGGAGCATACCCACTGTTCTATTCTTCAAAAATGGAGAAAAGAAAGAAAGCATAATTGGTGCCGTTCCCAAGTCCACTTTGTCCGCAACAGTGGAGAAATATGCTGACATATAG 555 0.4342 MALENCVRVATVGTGARPQQCLLHPFSKREKLVFPTFGGFKKSLSKSTLSNASSLYSAAAGKNRKSRFICKAREAVNEVRVVTDSSWNSLVIESETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIVCYKLNTDDCPNIATQYGIRSIPTVLFFKNGEKKESIIGAVPKSTLSATVEKYADI 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00056 184 TIGRFAM thioredoxin: thioredoxin 83 180 IPR005746 GO:0015035
Cca05g00056 184 ProSitePatterns Thioredoxin family active site. 99 117 IPR017937 -
Cca05g00056 184 CDD TRX_family 91 179 - -
Cca05g00056 184 PRINTS Thioredoxin family signature 98 106 - -
Cca05g00056 184 PRINTS Thioredoxin family signature 106 115 - -
Cca05g00056 184 PRINTS Thioredoxin family signature 146 157 - -
Cca05g00056 184 PANTHER GEO12009P1 27 181 - -
Cca05g00056 184 Gene3D Glutaredoxin 79 183 - -
Cca05g00056 184 SUPERFAMILY Thioredoxin-like 67 182 IPR036249 -
Cca05g00056 184 Pfam Thioredoxin 79 179 IPR013766 -
Cca05g00056 184 PANTHER THIOREDOXIN M-TYPE PROTEIN 27 181 - -
Cca05g00056 184 ProSiteProfiles Thioredoxin domain profile. 44 183 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00056 Cca-Chr5 1290222 1291274 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00056 K03671 - gmx:100500292 258.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00056 05 1290222 1291274 Cca05g00056 05 1290222 1291274 ECH