Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00054 ATGGGTATTGCGCATACCTTGTTCGGGATATTGGGGAATGGTTCTGGTTTGTTCCTCTTCTTGGCTCCAACAGTCACATTCAGGAGAATCATCGTGAACAAATCCACAGAGAAGTTCTCGGGCGTTCCTTACCCCATGACACTGCTCAACTGTCTTCTTTCTTCTTGGTATGGTTTGCCGTTTGTGTCTCCAAACAACATACTTGTGACAGTTATCAATGGCACAGGGGCAGTGATTGAAACTATATACGTTTTGATCTTCGTCTTGTTCGCACCGAAGAAAGAGAAGGCTAAAGTTCTTGGTCTTTTCTCGTTTGTCGTAGCAGTGTTCTCTGGTGTCGTTTTGGTGTCCCTGTTAGCACTGCATGGCCAAGCTAGAAAGATCTTCTGTGGCTTCGCTGCTGCCATATTTTCCATCATCATGTATGGTTCACCACTCTCAATAATGAGGCTAGTGATCAAAAGCAAGAGCGTGGAGTTTATGCCATTCTTCCTATCGCTATTTGTGTTTCTCTGCGGCACTTCTTGGTTTATCTTCGGTCTGCTAGGTCATGACCTATTTGTGACAGTACCGAACGGCGTGGGTTCTGCGTTGGGGACAACGCAACTAATACTGTATTTTATATACCGTGATAACAAAGGTGATCCAAAATCAGCAACAACAAAAGAAGAAGCCATGGAAATGGGTACCACCGATAATAAAGCCCCCACATCATCAATAGAACCGAACCAATCCAACTCAAATGAAAATCAAGAGGGACACGTCTAA 768 0.4427 MGIAHTLFGILGNGSGLFLFLAPTVTFRRIIVNKSTEKFSGVPYPMTLLNCLLSSWYGLPFVSPNNILVTVINGTGAVIETIYVLIFVLFAPKKEKAKVLGLFSFVVAVFSGVVLVSLLALHGQARKIFCGFAAAIFSIIMYGSPLSIMRLVIKSKSVEFMPFFLSLFVFLCGTSWFIFGLLGHDLFVTVPNGVGSALGTTQLILYFIYRDNKGDPKSATTKEEAMEMGTTDNKAPTSSIEPNQSNSNENQEGHV 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00054 255 Gene3D - 9 103 - -
Cca05g00054 255 PANTHER RAG1-ACTIVATING PROTEIN 1 4 238 - -
Cca05g00054 255 Pfam Sugar efflux transporter for intercellular exchange 131 213 IPR004316 GO:0016021
Cca05g00054 255 Pfam Sugar efflux transporter for intercellular exchange 7 94 IPR004316 GO:0016021
Cca05g00054 255 MobiDBLite consensus disorder prediction 231 255 - -
Cca05g00054 255 MobiDBLite consensus disorder prediction 215 255 - -
Cca05g00054 255 Gene3D - 127 221 - -
Cca05g00054 255 PANTHER BIDIRECTIONAL SUGAR TRANSPORTER SWEET 4 238 IPR018180 GO:0051119
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00054 Cca-Chr5 1237966 1240848 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00054 1 190 Miscellaneous Gene Families AT1G21460 74.211 8.19e-104 298
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00054 K15382 - gmx:100799083 370.548
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00054 05 1237966 1240848 Cca05g00054 05 1237966 1240848 ECH