Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00049 ATGATTACAGGGGACGATTTGTACAAGGTGATGTGCGCCATGGTGCCGCTATATTTCGCAATGTTGGTGGCTTATGTTTCGGTGAAATGGTGCAAGATGTTCAGCCCCGACCAATGTTCCGGAATCAACAGATTCGTGGCAGTGTTCGCTGTTCCGGTGCTTTCCTTCCACTTCATTTCGCTCAACAACCCATACCAAATGGACGCAAAGTTCATCATAGCGGACACGCTCTCCAAGATCATCGTGCTTCTCTTGCTCTCGCTTTGGACCCTCTTCTTCGCCAAAGGCTCCTTGGAGTGGCTCATCACTCTCTTCTCACTCGCCACCTTGCCTAACACACTCGTCATGGGTATCCCCCTCCTCCAAGCCATGTACGGCGACTTCACCCAATCCCTCATGGTGCAACTCCTAGTCCTTCAATGCATCATATGGTATACTCTACTACTGTTCCTGTTCGAGTACAGAGCGGCGACCCTTTTGATCGAGAGGCAGTTCCCGGGGCAAGCGGCGGCGTCCATAACGAAAATCGAGGTGGACGGCGACGTCATATCGCTCGACGGCCACGACATGCCGCTGCGGACGGAGTCCGAGACCGACGACCACGGCCGGATTCGGGTGCGGATCCGCCGCTCCATTTCGTCGGCGCCGGAGACCAACTCCTCCGTCGGCAACACCGCCGTCACTCCGAGGCCCTCCAACCTCTCCAACGCCGACATATTCTCGATCAACACGCCGCTGCACCTCCACGACGGCGACCTCCCCGCCGCCGCCAGCCCCCACCTCTCCGGCTACGCCTCCTCCGACGCCTACTCGCTGCAGCCCACGCCGCGCGCCTCCAACTTCAACGAGATGGAGGCCGGCACCCCCGTCTGGGGGAGGTCGCCGGTCGTCGCCGGGAGAGTCTGCCGGCAGTCGTCTCCGGCGGCGAGGGTGGTCTGGGAGTCGCCGGGAAAATGCCTTGGAGAAGAGAGACAAGGTTGCAAAGATATTACTATGTCAGATAAAGAAATCAGCTTCAGAGACAGCACCAAAGTCTCAATGCCAGGAGAAGCTACAGGCCCCAAAGACGCAGTTGCTAATAACCAAAAAATGCCACATGCCTTTGTCATGATGAGGCTTATACTCGTCGTAGTGGGGAGAAAACTTTCTCGAAACCCTAATACATATTCTAGTGTATTAGGACTTCTTTGGTCTCTAATCTCTTTCAAATGGAATATGGAAATGCCTAGTCTTGTCAAATCATCCGTCAAAATCATCTCCGATGCGGGCCTTGGGATGGCCATGTTTAGCTTAGGGCTTTTCATGGCCCTTCAGCCTCGTATCATAGCCTGCGGTACCAAAAGGGCTGTGATAGGCATGGCCATTCGCTTCCTTTGTGGCCCTCTTGTAATGTCTGCCACCTCCATTGCAATTGGATTAAGACAAGACAGACTACACACTGCCATTGTACAGGCTGCTCTTCCTCAGGGGATAGTGCCATTTGTATTTGCAAGGGAATATGGACTGCACCCTGATATTTTGAGCACAGGGGTTATCTTTGGCATGTTAGTTTCCTTACCGATAACTCTCCTATATTACATATTTCTTGGCTTGTGA 1596 0.5357 MITGDDLYKVMCAMVPLYFAMLVAYVSVKWCKMFSPDQCSGINRFVAVFAVPVLSFHFISLNNPYQMDAKFIIADTLSKIIVLLLLSLWTLFFAKGSLEWLITLFSLATLPNTLVMGIPLLQAMYGDFTQSLMVQLLVLQCIIWYTLLLFLFEYRAATLLIERQFPGQAAASITKIEVDGDVISLDGHDMPLRTESETDDHGRIRVRIRRSISSAPETNSSVGNTAVTPRPSNLSNADIFSINTPLHLHDGDLPAAASPHLSGYASSDAYSLQPTPRASNFNEMEAGTPVWGRSPVVAGRVCRQSSPAARVVWESPGKCLGEERQGCKDITMSDKEISFRDSTKVSMPGEATGPKDAVANNQKMPHAFVMMRLILVVVGRKLSRNPNTYSSVLGLLWSLISFKWNMEMPSLVKSSVKIISDAGLGMAMFSLGLFMALQPRIIACGTKRAVIGMAIRFLCGPLVMSATSIAIGLRQDRLHTAIVQAALPQGIVPFVFAREYGLHPDILSTGVIFGMLVSLPITLLYYIFLGL 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00049 531 PANTHER AUXIN EFFLUX CARRIER COMPONENT 6 1 531 - -
Cca05g00049 531 PANTHER AUXIN EFFLUX CARRIER COMPONENT 1B-RELATED 1 531 - -
Cca05g00049 531 Pfam Membrane transport protein 10 526 IPR004776 GO:0016021|GO:0055085
Cca05g00049 531 TIGRFAM 2a69: auxin efflux carrier 1 531 IPR014024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00049 Cca-Chr5 1161915 1170633 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00049 1 509 Organic Solute Cotransporters AT1G77110 65.116 0.0 690
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00049 K13947 - gmx:100800139 921.383
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00049 05 1161915 1170633 Cca05g00049 05 1161915 1170633 ECH