Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca05g00047 atGATACTGGTGGTGATCGTGGCGGAGGTGCTAGAGGAGTACACGGCGTTGCTGGCGAGGGTGCTGGTGAAGAAACAAAGGAAAGGTCTTCCATATACTAGCGACGAAAACCATGCACGTACATACTCTTTAAGCCTTCGCCGCCGCCACCACGTGTCGCCGCCGAAATGTGCGGTGGCCGTCTCAGGGCCGGAGATGCTGTCAATGCCACCGGAAAAGTTAGAAGTTTTCAAGTCACTTGATGGATGGGCCTGGGAGTGTGTGGTGCCAATGCTGAAGCCCGTGGAGCAGTGCTGGCAGCCACAGAGCCTGGTCCCTGACTCCTCATTGCCGCACGAAGAGTTCATGGAAGAGGTTAAGGCTCTTCGCCAACGGGCCAAGGAGCTACCCGACGACTACTTGGTGGTCTTGGTGGGTGACATGGTCACCGAAGAAGCTCTTCCCACTTACCAGACCATATTGACCACCATGGAAGGGGTTCAAGATGAGCCCGGAAGGAGCCCAAACCCATGGGCCACGTGGATCCGAGGCTGGACTGCCGAAGAAAACAGACACGGGGATTTGCTCAGAACTTATTTGTATCTCTCTGGTCGCGTTCACATGAACATGATCGATAAGACTATTCATTATCTCATTTCTGCTGGCATGGAGCATGGTTTGGGGAACAACCCGTATTTGGGATTTGTGTACACGTCATTCCAAGAGAGAGCGACGTTCGTGTCACACGGCAACACAGCTCGGCTTGCGAAGGAGGGAGGTGATCCGGTGCTGGCGCGCATATGCGGGACCATTGCGGCCGATGAGAAACGGCACGAGAACGTGTACTCGAGGGTCGTGGAGAAGCTTCTAGAAGTGGACCCCTCGGGTGCAATGGAGGCCATAGCGTATATGATGGAAAAGAAGATCACGATGCCGGCACACCTTATGTACGATGGGGAGGACCCCAGGCTATTCGAGCACTTTTCTGCGGTGGCTCAACGTACGGGCGTGTACACCGCTAATGACTATGCTGACATCTTGGAGTTTCTGATCGGACAGTGGAGATTGGAGAAGCTGGGAGGTTTGACGGCTGAGGGAAAGAGGGCGCAGGATTATGTGTGTGGGTTAGCACCCAGGATTAGGAAGTTGCAAGAGCGAGCTGATGAGAGGGCGCGTAAGATGAAGCCTCGTGCCGTCAAGTTCAGCTGGATCTTCAATAAAGAACTGCTTTTGTGA 1215 0.5407 MILVVIVAEVLEEYTALLARVLVKKQRKGLPYTSDENHARTYSLSLRRRHHVSPPKCAVAVSGPEMLSMPPEKLEVFKSLDGWAWECVVPMLKPVEQCWQPQSLVPDSSLPHEEFMEEVKALRQRAKELPDDYLVVLVGDMVTEEALPTYQTILTTMEGVQDEPGRSPNPWATWIRGWTAEENRHGDLLRTYLYLSGRVHMNMIDKTIHYLISAGMEHGLGNNPYLGFVYTSFQERATFVSHGNTARLAKEGGDPVLARICGTIAADEKRHENVYSRVVEKLLEVDPSGAMEAIAYMMEKKITMPAHLMYDGEDPRLFEHFSAVAQRTGVYTANDYADILEFLIGQWRLEKLGGLTAEGKRAQDYVCGLAPRIRKLQERADERARKMKPRAVKFSWIFNKELLL 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca05g00047 404 SUPERFAMILY Ferritin-like 67 403 IPR009078 -
Cca05g00047 404 Gene3D Ribonucleotide Reductase, subunit A 59 404 IPR012348 GO:0016491
Cca05g00047 404 PANTHER STEAROYL-[ACYL-CARRIER-PROTEIN] 9-DESATURASE 6, CHLOROPLASTIC 57 403 - -
Cca05g00047 404 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 57 403 IPR005067 GO:0006631|GO:0045300
Cca05g00047 404 PIRSF Dlt9_acylACP_des 32 404 IPR005067 GO:0006631|GO:0045300
Cca05g00047 404 Pfam Fatty acid desaturase 72 398 IPR005067 GO:0006631|GO:0045300
Cca05g00047 404 CDD Acyl_ACP_Desat 72 380 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca05g00047 Cca-Chr5 1134279 1137396 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca05g00047 68 402 Acyl Lipid Metabolism Gene Families AT1G43800 71.726 0.0 527
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca05g00047 K03921 - gmx:100816146 576.244
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca05g00047 05 1134279 1137396 Cca05g00047 05 1134279 1137396 ECH